errors when run wrf.exe afer modifying wrfinput

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Genhou_SUN
Posts: 1
Joined: Wed Apr 28, 2021 7:06 am

errors when run wrf.exe afer modifying wrfinput

Post by Genhou_SUN » Wed Apr 28, 2021 7:50 am

Hi, everyone. I have one problem and need help in running wrf.exe.

I would like to run meso-scale simulation case using WRF 4.2. The 3-nested simulations using wrfinput with no changes are fine. but the simulations fail when I modify the soil moisture like adding 0.03 to the original SMOIS of wrfinput_d03. Then I believe, the changes in soil moisture in wrfinput_d03

I have run the same 3-nested simulations using WRF3.6 and never found such a problem.


%%% namelist.input
&time_control
run_days = 0,
run_hours = 26,
run_minutes = 0,
run_seconds = 0,
start_year = 2011, 2011, 2011,
start_month = 08, 08, 08,
start_day = 06, 06, 06,
start_hour = 18, 18, 18,
end_year = 2011, 2011, 2011,
end_month = 08, 08, 08,
end_day = 07, 07, 07,
end_hour = 20, 20, 20,
interval_seconds = 3600
input_from_file = .true.,.true.,.true.,
history_interval = 30, 10, 6,
frames_per_outfile = 1, 1, 1,
restart = .false.,
restart_interval = 1440,
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
/

&domains
time_step = 10,
time_step_fract_num = 0,
time_step_fract_den = 1,
max_dom = 3,
e_we = 100, 100, 100,
e_sn = 100, 100, 100,
e_vert = 80, 80, 80,
p_top_requested = 10000,
num_metgrid_levels = 38,
num_metgrid_soil_levels = 4,
dx = 13500,4500,1500,
dy = 13500,4500,1500,
grid_id = 1, 2, 3,
parent_id = 0, 1, 2,
i_parent_start = 1, 34, 34,
j_parent_start = 1, 34, 34,
parent_grid_ratio = 1, 3, 3,
parent_time_step_ratio = 1, 3, 3,
feedback = 1,
smooth_option = 0
/

&physics

mp_physics = 2, 2, 2,
cu_physics = 1, 0, 0,
ra_lw_physics = 1, 1, 1,
ra_sw_physics = 1, 1, 1,
bl_pbl_physics = 8, 8, 8,
sf_sfclay_physics = 1, 1, 1,
sf_surface_physics = 2, 2, 2,
radt = 20, 20, 20,
bldt = 0,
cudt = 5, 5, 5,
icloud = 1,
num_land_cat = 21,
sf_urban_physics = 0, 0, 0,
/

&fdda
/

&dynamics
hybrid_opt = 2,
w_damping = 1,
diff_opt = 2, 2, 2,
km_opt = 4, 4, 4,
diff_6th_opt = 0, 0, 0,
diff_6th_factor = 0.12, 0.12, 0.12,
base_temp = 290.
damp_opt = 3,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.2, 0.2, 0.2
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 1, 1, 1,
scalar_adv_opt = 1, 1, 1,
gwd_opt = 1, 1, 0,
/

&bdy_control
spec_bdy_width = 5,
specified = .true.
/

&grib2
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,


/



%%% rsl.error.0000
taskid: 0 hostname: cn7470
module_io_quilt_old.F 2931 F
Quilting with 1 groups of 0 I/O tasks.
Ntasks in X 8 , ntasks in Y 9
Domain # 1: dx = 13500.000 m
Domain # 2: dx = 4500.000 m
Domain # 3: dx = 1500.000 m
WRF V4.2 MODEL
*************************************
Parent domain
ids,ide,jds,jde 1 100 1 100
ims,ime,jms,jme -4 20 -4 18
ips,ipe,jps,jpe 1 13 1 11
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 30250976 bytes allocated
med_initialdata_input: calling input_input
Input data is acceptable to use: wrfinput_d01
CURRENT DATE = 2011-08-06_18:00:00
SIMULATION START DATE = 2011-08-06_18:00:00
Timing for processing wrfinput file (stream 0) for domain 1: 3.82996 elapsed seconds
Max map factor in domain 1 = 1.04. Scale the dt in the model accordingly.
D01: Time step = 10.00000 (s)
D01: Grid Distance = 13.50000 (km)
D01: Grid Distance Ratio dt/dx = 0.7407407 (s/km)
D01: Ratio Including Maximum Map Factor = 0.7677824 (s/km)
D01: NML defined reasonable_time_step_ratio = 6.000000
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
*************************************
Nesting domain
ids,ide,jds,jde 1 100 1 100
ims,ime,jms,jme -4 24 -4 21
ips,ipe,jps,jpe 1 13 1 11
INTERMEDIATE domain
ids,ide,jds,jde 32 70 32 70
ims,ime,jms,jme 27 47 27 47
ips,ipe,jps,jpe 30 37 30 37
*************************************
d01 2011-08-06_18:00:00 alloc_space_field: domain 2 , 5558364 bytes allocated
d01 2011-08-06_18:00:00 alloc_space_field: domain 2 , 38407276 bytes allocated
d01 2011-08-06_18:00:00 *** Initializing nest domain # 2 from an input file. ***
d01 2011-08-06_18:00:00 med_initialdata_input: calling input_input
d01 2011-08-06_18:00:00 Input data is acceptable to use: wrfinput_d02
Timing for processing wrfinput file (stream 0) for domain 2: 9.54860 elapsed seconds
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
Max map factor in domain 1 = 1.04. Scale the dt in the model accordingly.
D01: Time step = 10.00000 (s)
D01: Grid Distance = 13.50000 (km)
D01: Grid Distance Ratio dt/dx = 0.7407407 (s/km)
D01: Ratio Including Maximum Map Factor = 0.7677824 (s/km)
D01: NML defined reasonable_time_step_ratio = 6.000000
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 1 grid%oid 1
Timing for Writing wrfout_d01_2011-08-06_18:00:00 for domain 1: 2.17610 elapsed seconds
d01 2011-08-06_18:00:00 Input data is acceptable to use: wrfbdy_d01
Timing for processing lateral boundary for domain 1: 4.95484 elapsed seconds
Tile Strategy is not specified. Assuming 1D-Y
WRF TILE 1 IS 1 IE 13 JS 1 JE 11
WRF NUMBER OF TILES = 1
*************************************
Nesting domain
ids,ide,jds,jde 1 100 1 100
ims,ime,jms,jme -4 24 -4 21
ips,ipe,jps,jpe 1 13 1 11
INTERMEDIATE domain
ids,ide,jds,jde 32 70 32 70
ims,ime,jms,jme 27 47 27 47
ips,ipe,jps,jpe 30 37 30 37
*************************************
d02 2011-08-06_18:00:00 alloc_space_field: domain 3 , 5558364 bytes allocated
d02 2011-08-06_18:00:00 alloc_space_field: domain 3 , 38407276 bytes allocated
d02 2011-08-06_18:00:00 *** Initializing nest domain # 3 from an input file. ***
d02 2011-08-06_18:00:00 med_initialdata_input: calling input_input
d02 2011-08-06_18:00:00 Input data is acceptable to use: wrfinput_d03
Timing for processing wrfinput file (stream 0) for domain 3: 5.71418 elapsed seconds
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 2 grid%oid 2
Timing for Writing wrfout_d02_2011-08-06_18:00:00 for domain 2: 2.58329 elapsed seconds
Tile Strategy is not specified. Assuming 1D-Y
WRF TILE 1 IS 1 IE 13 JS 1 JE 11
WRF NUMBER OF TILES = 1
mediation_integrate.G 1944 DATASET=HISTORY
mediation_integrate.G 1945 grid%id 3 grid%oid 2
Timing for Writing wrfout_d03_2011-08-06_18:00:00 for domain 3: 5.01042 elapsed seconds
Tile Strategy is not specified. Assuming 1D-Y
WRF TILE 1 IS 1 IE 13 JS 1 JE 11
WRF NUMBER OF TILES = 1
Timing for main: time 2011-08-06_18:00:01 on domain 3: 5.16240 elapsed seconds
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
wrf.exe 00000000032BD6EC for__signal_handl Unknown Unknown
libpthread-2.17.s 00002AF9C79C4370 Unknown Unknown Unknown
wrf.exe 0000000002D456AF Unknown Unknown Unknown
wrf.exe 0000000002D42E14 Unknown Unknown Unknown
wrf.exe 0000000002D41BF7 Unknown Unknown Unknown
wrf.exe 000000000256AAC2 Unknown Unknown Unknown
wrf.exe 0000000001DEB816 Unknown Unknown Unknown
wrf.exe 0000000001537397 Unknown Unknown Unknown
wrf.exe 00000000013636EC Unknown Unknown Unknown
wrf.exe 0000000000575A49 Unknown Unknown Unknown
wrf.exe 0000000000576034 Unknown Unknown Unknown
wrf.exe 0000000000576034 Unknown Unknown Unknown
wrf.exe 0000000000416CF7 Unknown Unknown Unknown
wrf.exe 0000000000416908 Unknown Unknown Unknown
wrf.exe 000000000041689E Unknown Unknown Unknown
libc-2.17.so 00002AF9C7BF2B35 __libc_start_main Unknown Unknown
wrf.exe 00000000004167A9 Unknown Unknown Unknown

kwerner
Posts: 2287
Joined: Wed Feb 14, 2018 9:21 pm

Re: errors when run wrf.exe afer modifying wrfinput

Post by kwerner » Fri Apr 30, 2021 9:04 pm

Hi,
As this is giving a segmentation fault, which isn't a very intuitive error, you may have to do some debugging to figure out the problem. Clearly your changes are what is causing the issue, and the reason it is found with this WRF version, as opposed to an older one may be due to some code updates, making it more sensitive. I'd advise taking a look at this FAQ to see how you can debug the code. From there, you can hopefully track down exactly where in the code the problem is occurring.
NCAR/MMM

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