Make ifort error

JCollins · Oct 30, 2018

Hello everyone.

I'm building MPAS_Atmosphere with intel. I have built the libraries (NETCDF, PNETCDF, PIO) with Intel and the environment is configured correctly. To compile MPAS I put the following:

Code:

make ifort CORE=atmosphere USE_PIO2=true

And I get this error:

Code:

( make all \
"FC_PARALLEL = mpif90" \
"CC_PARALLEL = mpicc" \
"CXX_PARALLEL = mpicxx" \
"FC_SERIAL = ifort" \
"CC_SERIAL = icc" \
"CXX_SERIAL = icpc" \
"FFLAGS_PROMOTION = -real-size 64" \
"FFLAGS_OPT = -O3 -convert big_endian -FR" \
"CFLAGS_OPT = -O3" \
"CXXFLAGS_OPT = -O3" \
"LDFLAGS_OPT = -O3" \
"FFLAGS_DEBUG = -g -convert big_endian -FR -CU -CB -check all -fpe0 -traceback" \
"CFLAGS_DEBUG = -g -traceback" \
"CXXFLAGS_DEBUG = -g -traceback" \
"LDFLAGS_DEBUG = -g -fpe0 -traceback" \
"FFLAGS_OMP = -qopenmp" \
"CFLAGS_OMP = -qopenmp" \
"CORE = atmosphere" \
"DEBUG = " \
"USE_PAPI = " \
"OPENMP = " \
"CPPFLAGS =  -D_MPI -DUNDERSCORE" )
make[1]: se ingresa al directorio `/home/models/intel/mpas'
cd src; make FC="mpif90" \
                 CC="mpicc" \
                 CXX="mpicxx" \
                 SFC="ifort" \
                 SCC="icc" \
                 LINKER="mpif90" \
                 CFLAGS="-O3" \
                 CXXFLAGS="-O3" \
                 FFLAGS="-O3 -convert big_endian -FR -real-size 64" \
                 LDFLAGS="-O3" \
                 RM="rm -f" \
                 CPP="cpp -P -traditional" \
                 CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=v6.1" \
                 LIBS="-L/home/libraries/intel/pio/lib -lpiof -lpioc -L/home/libraries/intel/pnetcdf/lib -lpnetcdf -L/home/libraries/intel/netcdf/lib -lnetcdff -lnetcdf" \
                 CPPINCLUDES="-DUSE_PIO2 -I/home/libraries/intel/pio/include -I/home/libraries/intel/pnetcdf/include -I/home/libraries/intel/netcdf/include" \
                 FCINCLUDES="-DUSE_PIO2 -I/home/libraries/intel/pio/include -I/home/libraries/intel/pnetcdf/include -I/home/libraries/intel/netcdf/include" \
                 CORE="atmosphere"\
                 AUTOCLEAN="false" \
                 GEN_F90="false" \
                 NAMELIST_SUFFIX="atmosphere" \
                 EXE_NAME="atmosphere_model"
make[2]: se ingresa al directorio `/home/models/intel/mpas/src'
( cd external; make FC="mpif90" SFC="ifort" CC="mpicc" SCC="icc" FFLAGS="-O3 -convert big_endian -FR -real-size 64" CFLAGS="-O3" CPP="cpp -P -traditional" NETCDF="/home/libraries/intel/netcdf" CORE="atmosphere" all )
make[3]: se ingresa al directorio `/home/models/intel/mpas/src/external'
( cd esmf_time_f90; make FC="mpif90 -O3 -convert big_endian -FR -real-size 64" CPP="cpp -P -traditional" CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=v6.1 -DHIDE_MPI" GEN_F90=false )
make[4]: se ingresa al directorio `/home/models/intel/mpas/src/external/esmf_time_f90'
rm -f ESMF_BaseMod.o ESMF_BaseMod.mod
mpif90 -O3 -convert big_endian -FR -real-size 64 -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=v6.1 -DHIDE_MPI -O3 -convert big_endian -FR -real-size 64 -c ESMF_BaseMod.F90 -DUSE_PIO2 -I/home/libraries/intel/pio/include -I/home/libraries/intel/pnetcdf/include -I/home/libraries/intel/netcdf/include -DUSE_PIO2 -I/home/libraries/intel/pio/include -I/home/libraries/intel/pnetcdf/include -I/home/libraries/intel/netcdf/include -I.
gfortran: error: big_endian: No existe el fichero o el directorio
gfortran: error: 64: No existe el fichero o el directorio
gfortran: error: big_endian: No existe el fichero o el directorio
gfortran: error: 64: No existe el fichero o el directorio
gfortran: error: unrecognized command line option ‘-convert’
gfortran: error: unrecognized command line option ‘-real-size’
gfortran: error: unrecognized command line option ‘-convert’
gfortran: error: unrecognized command line option ‘-real-size’
make[4]: *** [ESMF_BaseMod.o] Error 1
make[4]: se sale del directorio `/home/models/intel/mpas/src/external/esmf_time_f90'
make[3]: *** [esmf_time] Error 2
make[3]: se sale del directorio `/home/models/intel/mpas/src/external'
make[2]: *** [externals] Error 2
make[2]: se sale del directorio `/home/models/intel/mpas/src'
make[1]: *** [mpas_main] Error 2
make[1]: se sale del directorio `/home/models/intel/mpas'
make: *** [ifort] Error 2

Any ideas?

mgduda · Oct 30, 2018

It looks like the "mpif90" command is actually invoking the "gfortran" compiler. Can you check whether your MPI installation was built with the Intel compilers?

JCollins · Nov 1, 2018

Yes, MPI is correct. I also have WRF compiled with Intel, and it works correctly. Do I have to change something in the Makefile?

JCollins · Nov 1, 2018

After reading your comment I decided to edit the Makefile, and in the lines of ifort I made the following change:

Code:

ifort:
        ( $(MAKE) all \
        "FC_PARALLEL = mpiifort" \
        "CC_PARALLEL = mpiicc" \
        "CXX_PARALLEL = mpiicpc" \
        "FC_SERIAL = ifort" \
        "CC_SERIAL = icc" \
        "CXX_SERIAL = icpc" \

With this change the compilation ended without failures.

Code:

*******************************************************************************
MPAS was built with default double-precision reals.
Debugging is off.
Parallel version is on.
Papi libraries are off.
TAU Hooks are off.
MPAS was built without OpenMP support.
MPAS was built with .F files.
The native timer interface is being used
Using the PIO 2 library.
*******************************************************************************

mgduda · Nov 7, 2018

It looks like you may be using the Intel MPI library, rather than, e.g., MPICH or OpenMPI; is that right? From what I recall, the WRF configuration file sets the compiler to "mpif90 -f90=ifort" or something similar, which might explain why WRF was able to build with no changes.

kwthomas · Nov 14, 2018

You are getting the default that "mpif90" is set to use. I've run into the same problem on BRIDGES/PSC.

If you have "mpiifort", you can try that. You'll have to change it in "configure.wrf".

You can try (tcsh syntax):

setenv I_MPI_F90 ifort
setenv I_MPI_CC icc

If this works, nothing needs to be changed on "configure.wrf".

ntmanhvn181 · Jul 7, 2019

Dear Mr. mgduda,0
I follow my installation script which was introduced in attachment to compilation MPAS model (version 6.3), however, I have the some problem when I use command "make ifort CORE=atmosphere USE_PIO2=true" to install this model.
Please help me solve this problem, I have try many ways but it isn't changed.
My error was introduced this following sentence:

Code:

[/( make all \
	"FC_PARALLEL = mpif90" \
	"CC_PARALLEL = mpicc" \
	"CXX_PARALLEL = mpicxx" \
	"FC_SERIAL = ifort" \
	"CC_SERIAL = icc" \
	"CXX_SERIAL = icpc" \
	"FFLAGS_PROMOTION = -real-size 64" \
	"FFLAGS_OPT = -O3 -convert big_endian -FR" \
	"CFLAGS_OPT = -O3" \
	"CXXFLAGS_OPT = -O3" \
	"LDFLAGS_OPT = -O3" \
	"FFLAGS_DEBUG = -g -convert big_endian -FR -CU -CB -check all -fpe0 -traceback" \
	"CFLAGS_DEBUG = -g -traceback" \
	"CXXFLAGS_DEBUG = -g -traceback" \
	"LDFLAGS_DEBUG = -g -fpe0 -traceback" \
	"FFLAGS_OMP = -qopenmp" \
	"CFLAGS_OMP = -qopenmp" \
	"CORE = atmosphere" \
	"DEBUG = " \
	"USE_PAPI = " \
	"OPENMP = " \
	"CPPFLAGS =  -D_MPI -DUNDERSCORE" )
make[1]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3'
cd src; make FC="mpif90" \
                 CC="mpicc" \
                 CXX="mpicxx" \
                 SFC="ifort" \
                 SCC="icc" \
                 LINKER="mpif90" \
                 CFLAGS="-O3" \
                 CXXFLAGS="-O3" \
                 FFLAGS="-O3 -convert big_endian -FR -real-size 64" \
                 LDFLAGS="-O3" \
                 RM="rm -f" \
                 CPP="cpp -P -traditional" \
                 CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION="unknown"" \
                 LIBS="-L/lib -lpiof -lpioc -L/share/apps/intel_16/netcdf/4.4.0/lib -lnetcdff -lnetcdf" \
                 CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" \
                 FCINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" \
                 CORE="atmosphere"\
                 AUTOCLEAN="false" \
                 GEN_F90="false" \
                 NAMELIST_SUFFIX="atmosphere" \
                 EXE_NAME="atmosphere_model"
make[2]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src'
( cd external; make FC="mpif90" SFC="ifort" CC="mpicc" SCC="icc" FFLAGS="-O3 -convert big_endian -FR -real-size 64" CFLAGS="-O3" CPP="cpp -P -traditional" NETCDF="/share/apps/intel_16/netcdf/4.4.0" CORE="atmosphere" all )
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external'
( cd esmf_time_f90; make FC="mpif90 -O3 -convert big_endian -FR -real-size 64" CPP="cpp -P -traditional" CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -DHIDE_MPI" GEN_F90=false )
make[4]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/esmf_time_f90'
ar -ru libesmf_time.a *.o
make[4]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/esmf_time_f90'
( cd ezxml; make )
make[4]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
rm -f *.o *.i
make -j 1 library
make[5]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
mpicc -O3 -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -c ezxml.c
make[5]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[4]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external'
( cd framework; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" all ) 
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/framework'
ar -ru libframework.a mpas_kind_types.o mpas_framework.o mpas_timer.o mpas_timekeeping.o mpas_constants.o mpas_attlist.o mpas_hash.o mpas_sort.o mpas_block_decomp.o mpas_block_creator.o mpas_dmpar.o mpas_abort.o mpas_decomp.o mpas_threading.o mpas_io.o mpas_io_streams.o mpas_bootstrapping.o mpas_io_units.o mpas_stream_manager.o mpas_stream_list.o mpas_forcing.o mpas_c_interfacing.o random_id.o pool_hash.o mpas_derived_types.o mpas_domain_routines.o mpas_field_routines.o mpas_pool_routines.o xml_stream_parser.o regex_matching.o mpas_field_accessor.o mpas_log.o ../external/ezxml/ezxml.o
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/framework'
ln -sf framework/libframework.a libframework.a
( cd operators; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" all ) 
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/operators'
ar -ru libops.a mpas_vector_operations.o mpas_matrix_operations.o mpas_tensor_operations.o mpas_rbf_interpolation.o mpas_vector_reconstruction.o mpas_spline_interpolation.o mpas_tracer_advection_helpers.o mpas_tracer_advection_mono.o mpas_tracer_advection_std.o mpas_geometry_utils.o
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/operators'
ln -sf operators/libops.a libops.a
(cd tools; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CC="icc" CFLAGS="-O3")
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
( make build_registry CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CC="icc" CFLAGS="-O3" )
make[4]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
*** Building MPAS tools from source ***
(cd registry; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CC="icc" CFLAGS="-O3")
make[5]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry'
(cd ../../external/ezxml; make CFLAGS="-O3 ")
make[6]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
rm -f *.o *.i
make -j 1 library
make[7]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -O3  -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -c ezxml.c
make[7]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[6]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
#(make ezxml CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include")
(make parse CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include")
make[6]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry'
make[6]: `parse' is up to date.
make[6]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry'
make[5]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry'
make[4]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
( make build_input_gen CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CC="icc" CFLAGS="-O3" )
make[4]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
*** Building MPAS tools from source ***
(cd input_gen; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CC="icc" CFLAGS="-O3")
make[5]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
(cd ../../external/ezxml; make CFLAGS="-O3 ")
make[6]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
rm -f *.o *.i
make -j 1 library
make[7]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -O3  -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -c ezxml.c
make[7]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[6]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
(make -j 1 namelist_gen CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include")
make[6]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
(cd ../../external/ezxml; make CFLAGS="-O3 ")
make[7]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
rm -f *.o *.i
make -j 1 library
make[8]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -O3  -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -c ezxml.c
make[8]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[7]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -O3 -I../../external/ezxml -o namelist_gen namelist_gen.o test_functions.o ../../external/ezxml/ezxml.o
make[6]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
(make -j 1 streams_gen CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include")
make[6]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
(cd ../../external/ezxml; make CFLAGS="-O3 ")
make[7]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
rm -f *.o *.i
make -j 1 library
make[8]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -O3  -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -c ezxml.c
make[8]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
make[7]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/external/ezxml'
icc -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -O3 -I../../external/ezxml -o streams_gen streams_gen.o test_functions.o ../../external/ezxml/ezxml.o
make[6]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
make[5]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen'
make[4]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools'
( cd core_atmosphere; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" REG_PARSE="/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry/parse" gen_includes )
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
cpp -P -traditional -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include Registry.xml > Registry_processed.xml
(if [ ! -d inc ]; then mkdir -p inc; fi) # To generate *.inc files
(cd inc; /work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/registry/parse < ../Registry_processed.xml )
Reading registry file from standard input
---- GENERATING IMMUTABLE STREAMS ----
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
( cd core_atmosphere; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" NL_GEN="/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen/namelist_gen" ST_GEN="/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen/streams_gen" core_input_gen )
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
if [ ! -e default_inputs ]; then  mkdir default_inputs; fi
( cd default_inputs; /work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen/namelist_gen ../Registry_processed.xml namelist.atmosphere in_defaults=true )
( cd default_inputs; /work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/tools/input_gen/streams_gen ../Registry_processed.xml streams.atmosphere stream_list.atmosphere. listed )
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
( cd core_atmosphere; make CPPFLAGS="-D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown" CPPINCLUDES="-DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include" all ) 
make[3]: Entering directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
rm -f mpas_atm_dimensions.o mpas_atm_dimensions.mod
mpif90 -D_MPI -DUNDERSCORE -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=unknown -DDO_PHYSICS -O3 -convert big_endian -FR -real-size 64 -c mpas_atm_dimensions.F -DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include -DUSE_PIO2 -I/include -I/share/apps/intel_16/netcdf/4.4.0/include -I../framework -I../operators -I./physics -I./dynamics -I./diagnostics -I./physics/physics_wrf -I../external/esmf_time_f90
mpas_atm_dimensions.F(35): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [PIO]
        use mpas_derived_types, only : MPAS_LOG_ERR, MPAS_LOG_CRIT
------------^
mpas_atm_dimensions.F(35): error #6580: Name in only-list does not exist.   [MPAS_LOG_ERR]
        use mpas_derived_types, only : MPAS_LOG_ERR, MPAS_LOG_CRIT
---------------------------------------^
mpas_atm_dimensions.F(35): error #6580: Name in only-list does not exist.   [MPAS_LOG_CRIT]
        use mpas_derived_types, only : MPAS_LOG_ERR, MPAS_LOG_CRIT
-----------------------------------------------------^
mpas_atm_dimensions.F(46): error #6279: A specification expression object must be a dummy argument, a COMMON block object, or an object accessible through host or use association.   [STRKIND]
        character(len=StrKIND) :: errstring1, errstring2
----------------------^
mpas_atm_dimensions.F(36): error #6580: Name in only-list does not exist.   [STRKIND]
        use mpas_kind_types, only : StrKIND
------------------------------------^
mpas_atm_dimensions.F(37): error #6580: Name in only-list does not exist.   [MPAS_LOG_WRITE]
        use mpas_log, only : mpas_log_write
-----------------------------^
mpas_atm_dimensions.F(46): error #6404: This name does not have a type, and must have an explicit type.   [STRKIND]
        character(len=StrKIND) :: errstring1, errstring2
----------------------^
compilation aborted for mpas_atm_dimensions.F (code 1)
make[3]: *** [mpas_atm_dimensions.o] Error 1
make[3]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src/core_atmosphere'
make[2]: *** [dycore] Error 2
make[2]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3/src'
make[1]: *** [mpas_main] Error 2
make[1]: Leaving directory `/work/users/cloud/user/manh/MPAS/MPAS-Model-6.3'
make: *** [ifort] Error 2]

mgduda · Jul 8, 2019

@ntmanhvn181 It looks like the compilation log is only a partial log -- for example, I don't see where the "mpas_derived_types.F" file is being compiled.

In any case, it looks like you've created a separate thread here, so I would propose to continue the discussion there.

Make ifort error

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