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Fail to compile UPP 11.0.0

Y

ykaore

New member
Hi people,

I want to convert my wrfout files from NetCDF to GRIB. While reading the options available to perform this task, I saw some people recommending the UPP software. However, I am struggling to install/compile the program. I followed the user guide, by I'm getting this error.

cd UPP/tests
./compile_upp.sh
Machine: unknown
-- The Fortran compiler identification is GNU 7.5.0
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran - works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 - yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting build type to 'Release' as none was specified.
-- Found MPI_C: /usr/lib64/mpi/gcc/mpich/lib64/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/lib64/mpi/gcc/mpich/lib64/libmpicxx.so (found version "3.1")
-- Found MPI_Fortran: /usr/lib64/mpi/gcc/mpich/lib64/libmpifort.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
CMake Error at cmake/FindNetCDF.cmake:210 (message):
Unable to properly find NetCDF. Found static libraries at:
/home/ykaore/wrf/upp/UPP/NetCDF_C_LIBRARY-NOTFOUND but could not run nc-config: Call Stack (most recent call first): CMakeLists.txt:37 (find_package)
CMake Error at cmake/FindNetCDF.cmake:210 (message): Unable to properly find NetCDF. Found static libraries at: /home/ykaore/wrf/upp/UPP/NetCDF_Fortran_LIBRARY-NOTFOUND but could not run nc-config: Call Stack (most recent call first): CMakeLists.txt:37 (find_package)
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:164 (message): Could NOT find NetCDF (missing: NetCDF_INCLUDE_DIRS NetCDF_LIBRARIES Fortran)
Call Stack (most recent call first): /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
cmake/FindNetCDF.cmake:284 (find_package_handle_standard_args) CMakeLists.txt:37 (find_package)
-- Configuring incomplete, errors occurred!
See also "/home/ykaore/wrf/upp/UPP/tests/build/CMakeFiles/CMakeOutput.log".
See also "/home/ykaore/wrf/upp/UPP/tests/build/CMakeFiles/CMakeError.log".


Can someone help me? Thanks in advance.
 
ykaore said:
Hi people,

I want to convert my wrfout files from NetCDF to GRIB. While reading the options available to perform this task, I saw some people recommending the UPP software. However, I am struggling to install/compile the program. I followed the user guide, by I'm getting this error.

cd UPP/tests
./compile_upp.sh
Machine: unknown
-- The Fortran compiler identification is GNU 7.5.0
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran - works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 - yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting build type to 'Release' as none was specified.
-- Found MPI_C: /usr/lib64/mpi/gcc/mpich/lib64/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/lib64/mpi/gcc/mpich/lib64/libmpicxx.so (found version "3.1")
-- Found MPI_Fortran: /usr/lib64/mpi/gcc/mpich/lib64/libmpifort.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
CMake Error at cmake/FindNetCDF.cmake:210 (message):
Unable to properly find NetCDF. Found static libraries at:
/home/ykaore/wrf/upp/UPP/NetCDF_C_LIBRARY-NOTFOUND but could not run nc-config: Call Stack (most recent call first): CMakeLists.txt:37 (find_package)
CMake Error at cmake/FindNetCDF.cmake:210 (message): Unable to properly find NetCDF. Found static libraries at: /home/ykaore/wrf/upp/UPP/NetCDF_Fortran_LIBRARY-NOTFOUND but could not run nc-config: Call Stack (most recent call first): CMakeLists.txt:37 (find_package)
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:164 (message): Could NOT find NetCDF (missing: NetCDF_INCLUDE_DIRS NetCDF_LIBRARIES Fortran)
Call Stack (most recent call first): /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
cmake/FindNetCDF.cmake:284 (find_package_handle_standard_args) CMakeLists.txt:37 (find_package)
-- Configuring incomplete, errors occurred!
See also "/home/ykaore/wrf/upp/UPP/tests/build/CMakeFiles/CMakeOutput.log".
See also "/home/ykaore/wrf/upp/UPP/tests/build/CMakeFiles/CMakeError.log".


Can someone help me? Thanks in advance.
Click to expand...
Somewhere I remember seeing on here that WRF wasn't compatible with newer UPP. Can someone confirm that here? @Ming Chen
 
I have talked to NOAA staff responsible for UPP update, and I was told that UPP still works for processing wrfout files. It is just that they no longer provide user support for UPP application in WRF.
 
Ming Chen said:
I have talked to NOAA staff responsible for UPP update, and I was told that UPP still works for processing wrfout files. It is just that they no longer provide user support for UPP application in WRF.
Click to expand...
I'm still struggling how I can install UPP software. I was reading this thread (How is UPP installed? | UFS Community Support), which it says UPPv4.1 was the last version to be officially supported and tested for WRF. Someone knows where can I find UPP version 4.1? I could find only versions 11.0.0 and 10.1.0 at Download | dtcenter.org
 
ykaore said:
I'm still struggling how I can install UPP software. I was reading this thread (How is UPP installed? | UFS Community Support), which it says UPPv4.1 was the last version to be officially supported and tested for WRF. Someone knows where can I find UPP version 4.1? I could find only versions 11.0.0 and 10.1.0 at Download | dtcenter.org
Click to expand...

It's a tricky process but it can be done. Here's the code snippet from my install code that gets upp 4.1 set up

Bash: 
###############################NCEPlibs#####################################
#The libraries are built and installed with
# ./make_ncep_libs.sh -s MACHINE -c COMPILER -d NCEPLIBS_DIR -o OPENMP [-m mpi] [-a APPLICATION]
#It is recommended to install the NCEPlibs into their own directory, which must be created before running the installer. Further information on the command line arguments can be obtained with
# ./make_ncep_libs.sh -h

#If iand error occurs go to https://github.com/NCAR/NCEPlibs/pull/16/files make adjustment and re-run ./make_ncep_libs.sh
############################################################################



cd $WRF_FOLDER/Downloads
git clone https://github.com/NCAR/NCEPlibs.git
cd NCEPlibs
mkdir $DIR/nceplibs

export JASPER_INC=$DIR/grib2/include
export PNG_INC=$DIR/grib2/include
export NETCDF=$DIR/NETCDF

#for loop to edit linux.gnu for nceplibs to install
#make if statement for gcc-9 or older
export GCC_VERSION=$(/usr/bin/gcc -dumpfullversion | awk '{print$1}')
export GFORTRAN_VERSION=$(/usr/bin/gfortran -dumpfullversion | awk '{print$1}')
export GPLUSPLUS_VERSION=$(/usr/bin/g++ -dumpfullversion | awk '{print$1}')

export GCC_VERSION_MAJOR_VERSION=$(echo $GCC_VERSION | awk -F. '{print $1}')
export GFORTRAN_VERSION_MAJOR_VERSION=$(echo $GFORTRAN_VERSION | awk -F. '{print $1}')
export GPLUSPLUS_VERSION_MAJOR_VERSION=$(echo $GPLUSPLUS_VERSION | awk -F. '{print $1}')

export version_10="10"

if [ $GCC_VERSION_MAJOR_VERSION -ge $version_10 ] || [ $GFORTRAN_VERSION_MAJOR_VERSION -ge $version_10 ] || [ $GPLUSPLUS_VERSION_MAJOR_VERSION -ge $version_10 ]
then
    y="24 28 32 36 40 45 49 53 56 60 64 68 69 73 74 79"
    for X in $y; do
        sed -i "${X}s/= /= $fallow_argument $boz_argument /g" $WRF_FOLDER/Downloads/NCEPlibs/macros.make.linux.gnu
    done
else
    echo ""
    echo "Loop not needed"
fi

if [ ${auto_config} -eq 1 ]
    then
        echo yes | ./make_ncep_libs.sh -s linux -c gnu -d $DIR/nceplibs -o 0 -m 1 -a upp
    else
        ./make_ncep_libs.sh -s linux -c gnu -d $DIR/nceplibs -o 0 -m 1 -a upp
fi

export PATH=$DIR/nceplibs:$PATH

echo " "
################################UPPv4.1######################################
#Previous verison of UPP
#WRF Support page recommends UPPV4.1 due to too many changes to WRF and UPP code
#since the WRF was written
#Option 8 gfortran compiler with distributed memory
#############################################################################
cd $WRF_FOLDER/
git clone -b dtc_post_v4.1.0 --recurse-submodules https://github.com/NOAA-EMC/EMC_post UPPV4.1
cd UPPV4.1
mkdir postprd
export NCEPLIBS_DIR=$DIR/nceplibs
export NETCDF=$DIR/NETCDF

if [ ${auto_config} -eq 1 ]
    then
        echo 8 | ./configure  #Option 8 gfortran compiler with distributed memory
    else
        ./configure  #Option 8 gfortran compiler with distributed memory
fi


#make if statement for gcc-9 or older
export GCC_VERSION=$(/usr/bin/gcc -dumpfullversion | awk '{print$1}')
export GFORTRAN_VERSION=$(/usr/bin/gfortran -dumpfullversion | awk '{print$1}')
export GPLUSPLUS_VERSION=$(/usr/bin/g++ -dumpfullversion | awk '{print$1}')

export GCC_VERSION_MAJOR_VERSION=$(echo $GCC_VERSION | awk -F. '{print $1}')
export GFORTRAN_VERSION_MAJOR_VERSION=$(echo $GFORTRAN_VERSION | awk -F. '{print $1}')
export GPLUSPLUS_VERSION_MAJOR_VERSION=$(echo $GPLUSPLUS_VERSION | awk -F. '{print $1}')

export version_10="10"

if [ $GCC_VERSION_MAJOR_VERSION -ge $version_10 ] || [ $GFORTRAN_VERSION_MAJOR_VERSION -ge $version_10 ] || [ $GPLUSPLUS_VERSION_MAJOR_VERSION -ge $version_10 ]
    then
        z="58 63"
        for X in $z; do
            sed -i "${X}s/(FOPT)/(FOPT) $fallow_argument $boz_argument  /g" $WRF_FOLDER/UPPV4.1/configure.upp
        done
    else
        echo ""
        echo "Loop not needed"
fi

./compile
cd $WRF_FOLDER/UPPV4.1/scripts
echo $PASSWD | sudo -S cpan install XML::LibXML
chmod +x run_unipost

# IF statement to check that all files were created.
 cd $WRF_FOLDER/UPPV4.1/exec
 n=$(ls ./*.exe | wc -l)
 if (( $n == 1 ))
    then
        echo "All expected files created."
        read -r -t 5 -p "Finished installing UPPV4.1. I am going to wait for 5 seconds only ..."
 else
     echo "Missing one or more expected files. Exiting the script."
     read -r -p "Please contact script authors for assistance, press 'Enter' to exit script."
     exit
 fi

echo " "
 
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