WRF real.exe tail rsl.error.0000

[Dipson11]

Hi,

I ran real.exe and I get some error while issuing the command "tal rsl.error.0000". I have attached the pictures of error and my namelist.input file. Thank you very much

 

[Dipson11]

I SOLVED IT USING "ulimit -s unlimited", but I have new errors.

Assume Noah LSM input
d02 2018-01-01_00:00:00 forcing artificial silty clay loam at 131 points, out of 35640
d02 2018-01-01_00:00:00 Timing for processing 1 s.
W A R N I N G : Unable to modify mask for tc_urb2d. Variable not found. File: myoutfields.txt at line 1
W A R N I N G : Unable to modify mask for qc_urb2d. Variable not found. File: myoutfields.txt at line 1
W A R N I N G : Unable to modify mask for tc_urb2d. Variable not found. File: myoutfields.txt at line 1
W A R N I N G : Unable to modify mask for qc_urb2d. Variable not found. File: myoutfields.txt at line 1
d02 2018-01-01_00:00:00 Timing for output 0 s.
d02 2018-01-01_00:00:00 Timing for loop # 1 = 2 s.
d01 2018-01-06_00:00:00 real_em: SUCCESS COMPLETE REAL_EM INIT


My myoutfields.txt is located in the /test/em_real directory and I have sf_ urban_physics =1 for all domain in namelist.input attached above, it says variable not founf., also should I worry about other errors?

I found out that the varibales tc_urb2d and qc_urb2d are defined inside noahmosaic scheme in Registry.em_common for sf_surface_mosaic==1, is this not supposed to be inside sf_urban_physics as stated in the documentation of WRF-urban , "https://ral.ucar.edu/sites/default/files/public/product-tool/WRF-LSM-Urban.pdf " . Should I add sf_surface_mosaic along with sf_urban_physics? My analysis is related to Urban heating so I need variables like 2m temperature, humidity and wind.

I got files wrfinput_d01 and wrfinput_d02, but there is no wrfinput_d03 . My maxdom is 3.

I tried to run wrf.exe wihtout addidng those variables in myoutfields.txt and it gives the same error,
(base) [bdipson@d01 em_real]$ tail rsl.error.0000
wrf.exe 00000000008F87CB Unknown Unknown Unknown
wrf.exe 0000000001C455FF Unknown Unknown Unknown
wrf.exe 00000000015FFFAC Unknown Unknown Unknown
wrf.exe 00000000005A9316 Unknown Unknown Unknown
wrf.exe 0000000000408081 Unknown Unknown Unknown
wrf.exe 000000000040803F Unknown Unknown Unknown
wrf.exe 0000000000407FDD Unknown Unknown Unknown
libc.so.6 000014680DA9EEB0 Unknown Unknown Unknown
libc.so.6 000014680DA9EF60 __libc_start_main Unknown Unknown
wrf.exe 0000000000407EF5 Unknown Unknown Unknown

PLEASE HELP !

 

[kwerner]

Can you attach all of your rsl* files (packaged in a single *.tar or zipped file) so that we can take a look? Thanks!

 

[dipson]

Hi, I solved it using more number of processor.
Now, I can see the output files but I dont see the processing...., it generates the output file but the freezes without displaying what is happening.

 

[Dipson11]

Since , one of my post was deleted due yo duplicate post or something, could you please answer the middle part of my question about variable tc_urb2d and qc_urb2d, these variable are stated in urban canopy model documentation but it is under noah mosaic, should I enable both?

Is the LU_index that I am getting on my wrfout from the lcz? Because I used geo data res = LCZ +default . ( i could see lu_index only upto 55), LCZ is supposed to be 61.

 

[kwerner]

I can see the variables TC_URB2D and QC_URB2D in both the mosaic and urban schemes. They are printed in upper-case in the urban scheme. To search for variables, make sure to do a case-insensitive search. If you are not intending to use the mosaic option, you shouldn't need to add that to get the variables you're trying to get.

 

[Dipson11]

hi kwerner, I have my sf_urban_physics=1 for all domain but I am not getting variable TC_URB2D And QC_URB2D in my wrfout files. I am running the simulation from test/em_real/wrf.exe . Am I doing anything wrong?. do i need to link urbanparm.tbl to URBPARM_LCZ.TBL?

I checked registry_em.common , I can see TC_URB2D AND QC_URBD , but on the bottom,
package noahucmscheme sf_urban_physics==1 - state:trb_urb4d,tw1_urb4d,tw2_urb4d,tgb_urb4d,sfw1_urb3d,sfw2_urb3d,sfr_urb3d,sfg_urb3d,a_u_bep,a_v_bep,a_t_bep,a_q_bep,a_e_bep,b_u_bep,b_v_bep,b_t_bep,b_q_bep,b_e_bep,dlg_bep,dl_u_bep,sf_bep,vl_bep,mh_urb2d,stdh_urb2d,lf_urb2d,lp_urb2d,hgt_urb2d,lb_urb2d,tgr_urb2d,cmcr_urb2d,drelr_urb2d,drelb_urb2d,drelg_urb2d,flxhumr_urb2d,flxhumb_urb2d,flxhumg_urb2d,tgrl_urb3d,smr_urb3d,cmgr_sfcdif,chgr_sfcdif,trl_urb3d,tgl_urb3d,tbl_urb3d,ahe,lf_urb2d_s,z0_urb2d,zd_urb2d

I have attached my ncdump of wrfout and namelist.input. my WRF version is 4.4.2.

 

[kwerner]

Hi,
It looks like you're receiving help for this question in this post. Ming is more of a physics expert than I am, so I am going to let you continue that conversation there from here forward.