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Has anyone encountered this situation in running convert_emiss.exe?

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C

cxyiyh

Member
Hi,everyone
Has anyone encountered this situation in running convert_emiss.exe?

NOW LINK namelist.input.d01 -> namelist.input
NOW LINK ../../WPS/met_em.d01.2014-04-22_00:00:00.nc -> met_em.d01.2014-04-22_00:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-22_06:00:00.nc -> met_em.d01.2014-04-22_06:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-22_12:00:00.nc -> met_em.d01.2014-04-22_12:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-22_18:00:00.nc -> met_em.d01.2014-04-22_18:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-23_00:00:00.nc -> met_em.d01.2014-04-23_00:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-23_06:00:00.nc -> met_em.d01.2014-04-23_06:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-23_12:00:00.nc -> met_em.d01.2014-04-23_12:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-23_18:00:00.nc -> met_em.d01.2014-04-23_18:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-24_00:00:00.nc -> met_em.d01.2014-04-24_00:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-24_06:00:00.nc -> met_em.d01.2014-04-24_06:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-24_12:00:00.nc -> met_em.d01.2014-04-24_12:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-24_18:00:00.nc -> met_em.d01.2014-04-24_18:00:00.nc
NOW LINK ../../WPS/met_em.d01.2014-04-25_00:00:00.nc -> met_em.d01.2014-04-25_00:00:00.nc
*** Error in `../chem/convert_emiss.exe': free(): invalid pointer: 0x000000001139fce0 ***
======= Backtrace: =========
/data01/CAR_M2/Software/local/lib/libc.so.6(+0x81299)[0x2b8b01fd5299]
../chem/convert_emiss.exe(for__free_vm+0x2f)[0x3a2a97f]
../chem/convert_emiss.exe(for__close_proc+0x485)[0x39cf7d5]
../chem/convert_emiss.exe(for__exit_handler+0x1ea)[0x39e19ba]
../chem/convert_emiss.exe(for__issue_diagnostic+0xb2c)[0x39de01c]
../chem/convert_emiss.exe(for__signal_handler+0x583)[0x39eacd3]
/data01/CAR_M2/Software/local/lib/libpthread.so.0(+0xf630)[0x2b8b01d47630]
/data01/CAR_M2/Software/netcdf-intel/lib/libnetcdf.so.11(nc_close+0x2b)[0x2b8b001aef4b]
/data01/CAR_M2/Software/netcdf-intel/lib/libnetcdff.so.6(nf_close_+0x1f)[0x2b8affd1391f]
../chem/convert_emiss.exe[0x3964066]
../chem/convert_emiss.exe[0x1ef532c]
../chem/convert_emiss.exe[0x1e0165a]
../chem/convert_emiss.exe[0x41458e]
../chem/convert_emiss.exe[0x413e22]
/data01/CAR_M2/Software/local/lib/libc.so.6(__libc_start_main+0xf5)[0x2b8b01f76555]
../chem/convert_emiss.exe[0x413d29]
======= Memory map: ========
00400000-03e57000 r-xp 00000000 08:01 137897098 /data01/CAR_M2/WRF/WRF-4.2/chem/convert_emiss.exe
04057000-04059000 r--p 03a57000 08:01 137897098 /data01/CAR_M2/WRF/WRF-4.2/chem/convert_emiss.exe
04059000-04250000 rw-p 03a59000 08:01 137897098 /data01/CAR_M2/WRF/WRF-4.2/chem/convert_emiss.exe
04250000-0f47c000 rw-p 00000000 00:00 0
1099a000-119cf000 rw-p 00000000 00:00 0 [heap]
2b8affae1000-2b8affb03000 r-xp 00000000 fd:00 33716101 /usr/lib64/ld-2.17.so
2b8affb03000-2b8affcbe000 rw-p 00000000 00:00 0
2b8affcbe000-2b8affcc8000 r--p 00000000 08:01 135793548 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/locale/en_US/ifcore_msg.cat
2b8affcc8000-2b8affcf5000 rw-p 00000000 00:00 0
2b8affcf5000-2b8affcf7000 r--p 00000000 08:01 135792638 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/locale/en_US/irc_msg.cat
2b8affcf7000-2b8affcf8000 rw-p 00000000 00:00 0
2b8affd02000-2b8affd03000 r--p 00021000 fd:00 33716101 /usr/lib64/ld-2.17.so
2b8affd03000-2b8affd04000 rw-p 00022000 fd:00 33716101 /usr/lib64/ld-2.17.so
2b8affd04000-2b8affd05000 rw-p 00000000 00:00 0
2b8affd05000-2b8affdbf000 r-xp 00000000 08:01 135142032 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdff.so.6.1.1
2b8affdbf000-2b8afffbe000 ---p 000ba000 08:01 135142032 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdff.so.6.1.1
2b8afffbe000-2b8afffbf000 r--p 000b9000 08:01 135142032 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdff.so.6.1.1
2b8afffbf000-2b8afffc4000 rw-p 000ba000 08:01 135142032 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdff.so.6.1.1
2b8afffc4000-2b8b0017c000 rw-p 00000000 00:00 0
2b8b0017c000-2b8b0026d000 r-xp 00000000 08:01 135141266 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdf.so.11.0.4
2b8b0026d000-2b8b0046c000 ---p 000f1000 08:01 135141266 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdf.so.11.0.4
2b8b0046c000-2b8b004bb000 r--p 000f0000 08:01 135141266 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdf.so.11.0.4
2b8b004bb000-2b8b004bd000 rw-p 0013f000 08:01 135141266 /data01/CAR_M2/Software/netcdf-intel/lib/libnetcdf.so.11.0.4
2b8b004bd000-2b8b004c7000 rw-p 00000000 00:00 0
2b8b004c7000-2b8b004d9000 r-xp 00000000 08:01 135015425 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5hl_fortran.so.8.0.0
2b8b004d9000-2b8b006d8000 ---p 00012000 08:01 135015425 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5hl_fortran.so.8.0.0
2b8b006d8000-2b8b006d9000 r--p 00011000 08:01 135015425 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5hl_fortran.so.8.0.0
2b8b006d9000-2b8b006da000 rw-p 00012000 08:01 135015425 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5hl_fortran.so.8.0.0
2b8b006da000-2b8b006fb000 r-xp 00000000 08:01 135015410 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_hl.so.8.0.0
2b8b006fb000-2b8b008fa000 ---p 00021000 08:01 135015410 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_hl.so.8.0.0
2b8b008fa000-2b8b008fb000 r--p 00020000 08:01 135015410 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_hl.so.8.0.0
2b8b008fb000-2b8b008fc000 rw-p 00021000 08:01 135015410 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_hl.so.8.0.0
2b8b008fc000-2b8b0090d000 rw-p 00000000 00:00 0
2b8b0090d000-2b8b0094c000 r-xp 00000000 08:01 135015374 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_fortran.so.8.0.0
2b8b0094c000-2b8b00b4b000 ---p 0003f000 08:01 135015374 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_fortran.so.8.0.0
2b8b00b4b000-2b8b00b4c000 r--p 0003e000 08:01 135015374 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_fortran.so.8.0.0
2b8b00b4c000-2b8b00b4e000 rw-p 0003f000 08:01 135015374 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5_fortran.so.8.0.0
2b8b00b4e000-2b8b00b4f000 rw-p 00000000 00:00 0
2b8b00b4f000-2b8b00e8f000 r-xp 00000000 08:01 135015314 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5.so.8.0.0
2b8b00e8f000-2b8b0108e000 ---p 00340000 08:01 135015314 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5.so.8.0.0
2b8b0108e000-2b8b01095000 r--p 0033f000 08:01 135015314 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5.so.8.0.0
2b8b01095000-2b8b0109b000 rw-p 00346000 08:01 135015314 /data01/CAR_M2/Software/hdf5-intel/lib/libhdf5.so.8.0.0
2b8b0109b000-2b8b0109d000 rw-p 00000000 00:00 0
2b8b0109d000-2b8b0119e000 r-xp 00000000 08:01 135149750 /data01/CAR_M2/Software/local/lib/libm-2.17.so
2b8b0119e000-2b8b0139d000 ---p 00101000 08:01 135149750 /data01/CAR_M2/Software/local/lib/libm-2.17.so
2b8b0139d000-2b8b0139e000 r--p 00100000 08:01 135149750 /data01/CAR_M2/Software/local/lib/libm-2.17.so
2b8b0139e000-2b8b0139f000 rw-p 00101000 08:01 135149750 /data01/CAR_M2/Software/local/lib/libm-2.17.so
2b8b0139f000-2b8b013ba000 r-xp 00000000 08:01 136843120 /data01/CAR_M2/Software/zlib-int/lib/libz.so.1.2.8
2b8b013ba000-2b8b015b9000 ---p 0001b000 08:01 136843120 /data01/CAR_M2/Software/zlib-int/lib/libz.so.1.2.8
2b8b015b9000-2b8b015ba000 r--p 0001a000 08:01 136843120 /data01/CAR_M2/Software/zlib-int/lib/libz.so.1.2.8
2b8b015ba000-2b8b015bb000 rw-p 0001b000 08:01 136843120 /data01/CAR_M2/Software/zlib-int/lib/libz.so.1.2.8
2b8b015bb000-2b8b015f4000 r-xp 00000000 08:01 135009843 /data01/CAR_M2/Software/mpich-intel/lib/libmpifort.so.12.1.0
2b8b015f4000-2b8b017f3000 ---p 00039000 08:01 135009843 /data01/CAR_M2/Software/mpich-intel/lib/libmpifort.so.12.1.0
2b8b017f3000-2b8b017f4000 r--p 00038000 08:01 135009843 /data01/CAR_M2/Software/mpich-intel/lib/libmpifort.so.12.1.0
2b8b017f4000-2b8b017f5000 rw-p 00039000 08:01 135009843 /data01/CAR_M2/Software/mpich-intel/lib/libmpifort.so.12.1.0
2b8b017f5000-2b8b01ae4000 r-xp 00000000 08:01 135009838 /data01/CAR_M2/Software/mpich-intel/lib/libmpi.so.12.1.0
2b8b01ae4000-2b8b01ce4000 ---p 002ef000 08:01 135009838 /data01/CAR_M2/Software/mpich-intel/lib/libmpi.so.12.1.0
2b8b01ce4000-2b8b01cf4000 r--p 002ef000 08:01 135009838 /data01/CAR_M2/Software/mpich-intel/lib/libmpi.so.12.1.0
2b8b01cf4000-2b8b01cfe000 rw-p 002ff000 08:01 135009838 /data01/CAR_M2/Software/mpich-intel/lib/libmpi.so.12.1.0
2b8b01cfe000-2b8b01d38000 rw-p 00000000 00:00 0
2b8b01d38000-2b8b01d4f000 r-xp 00000000 08:01 135150053 /data01/CAR_M2/Software/local/lib/libpthread-2.17.so
2b8b01d4f000-2b8b01f4e000 ---p 00017000 08:01 135150053 /data01/CAR_M2/Software/local/lib/libpthread-2.17.so
2b8b01f4e000-2b8b01f4f000 r--p 00016000 08:01 135150053 /data01/CAR_M2/Software/local/lib/libpthread-2.17.so
2b8b01f4f000-2b8b01f50000 rw-p 00017000 08:01 135150053 /data01/CAR_M2/Software/local/lib/libpthread-2.17.so
2b8b01f50000-2b8b01f54000 rw-p 00000000 00:00 0
2b8b01f54000-2b8b02118000 r-xp 00000000 08:01 135148916 /data01/CAR_M2/Software/local/lib/libc-2.17.so
2b8b02118000-2b8b02317000 ---p 001c4000 08:01 135148916 /data01/CAR_M2/Software/local/lib/libc-2.17.so
2b8b02317000-2b8b0231b000 r--p 001c3000 08:01 135148916 /data01/CAR_M2/Software/local/lib/libc-2.17.so
2b8b0231b000-2b8b0231d000 rw-p 001c7000 08:01 135148916 /data01/CAR_M2/Software/local/lib/libc-2.17.so
2b8b0231d000-2b8b02322000 rw-p 00000000 00:00 0
2b8b02322000-2b8b02337000 r-xp 00000000 08:01 135149261 /data01/CAR_M2/Software/local/lib/libgcc_s-4.8.5-20150702.so.1
2b8b02337000-2b8b02536000 ---p 00015000 08:01 135149261 /data01/CAR_M2/Software/local/lib/libgcc_s-4.8.5-20150702.so.1
2b8b02536000-2b8b02537000 r--p 00014000 08:01 135149261 /data01/CAR_M2/Software/local/lib/libgcc_s-4.8.5-20150702.so.1
2b8b02537000-2b8b02538000 rw-p 00015000 08:01 135149261 /data01/CAR_M2/Software/local/lib/libgcc_s-4.8.5-20150702.so.1
2b8b02538000-2b8b0253a000 r-xp 00000000 08:01 135149064 /data01/CAR_M2/Software/local/lib/libdl-2.17.so
2b8b0253a000-2b8b0273a000 ---p 00002000 08:01 135149064 /data01/CAR_M2/Software/local/lib/libdl-2.17.so
2b8b0273a000-2b8b0273b000 r--p 00002000 08:01 135149064 /data01/CAR_M2/Software/local/lib/libdl-2.17.so
2b8b0273b000-2b8b0273c000 rw-p 00003000 08:01 135149064 /data01/CAR_M2/Software/local/lib/libdl-2.17.so
2b8b0273c000-2b8b02765000 r-xp 00000000 08:01 135793545 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifport.so.5
2b8b02765000-2b8b02964000 ---p 00029000 08:01 135793545 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifport.so.5
2b8b02964000-2b8b02965000 r--p 00028000 08:01 135793545 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifport.so.5
2b8b02965000-2b8b02967000 rw-p 00029000 08:01 135793545 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifport.so.5
2b8b02967000-2b8b0296a000 rw-p 00000000 00:00 0
2b8b0296a000-2b8b02aa3000 r-xp 00000000 08:01 135793537 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifcore.so.5
2b8b02aa3000-2b8b02ca3000 ---p 00139000 08:01 135793537 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifcore.so.5
2b8b02ca3000-2b8b02ca6000 r--p 00139000 08:01 135793537 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifcore.so.5
2b8b02ca6000-2b8b02ca9000 rw-p 0013c000 08:01 135793537 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libifcore.so.5
2b8b02ca9000-2b8b02cc7000 rw-p 00000000 00:00 0
2b8b02cc7000-2b8b0300a000 r-xp 00000000 08:01 135792615 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libimf.so
2b8b0300a000-2b8b0320a000 ---p 00343000 08:01 135792615 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libimf.so
2b8b0320a000-2b8b03211000 r--p 00343000 08:01 135792615 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libimf.so
2b8b03211000-2b8b03267000 rw-p 0034a000 08:01 135792615 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libimf.so
2b8b03267000-2b8b04987000 r-xp 00000000 08:01 135792631 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libsvml.so
2b8b04987000-2b8b04b86000 ---p 01720000 08:01 135792631 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libsvml.so
2b8b04b86000-2b8b04bd6000 r--p 0171f000 08:01 135792631 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libsvml.so
2b8b04bd6000-2b8b04c0a000 rw-p 0176f000 08:01 135792631 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libsvml.so
2b8b04c0a000-2b8b04c78000 r-xp 00000000 08:01 135792617 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libintlc.so.5
2b8b04c78000-2b8b04e78000 ---p 0006e000 08:01 135792617 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libintlc.so.5
2b8b04e78000-2b8b04e79000 r--p 0006e000 08:01 135792617 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libintlc.so.5
2b8b04e79000-2b8b04e7a000 rw-p 0006f000 08:01 135792617 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libintlc.so.5
2b8b04e7a000-2b8b04e7c000 rw-p 00000000 00:00 0
2b8b04e7c000-2b8b04fda000 r-xp 00000000 08:01 135792623 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libirng.so
2b8b04fda000-2b8b051da000 ---p 0015e000 08:01 135792623 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libirng.so
2b8b051da000-2b8b051db000 r--p 0015e000 08:01 135792623 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libirng.so
2b8b051db000-2b8b051ee000 rw-p 0015f000 08:01 135792623 /data01/CAR_M2/Software/intel/compilers_and_libraries_2019.0.117/linux/compiler/lib/intel64_lin/libirng.so
2b8b051ee000-2b8b051f5000 r-xp 00000000 08:01 135150170 /data01/CAR_M2/Software/local/lib/librt-2.17.so
2b8b051f5000-2b8b053f4000 ---p 00007000 08:01 135150170 /data01/CAR_M2/Software/local/lib/librt-2.17.so
2b8b053f4000-2b8b053f5000 r--p 00006000 08:01 135150170 /data01/CAR_M2/Software/local/lib/librt-2.17.so
2b8b053f5000-2b8b053f6000 rw-p 00007000 08:01 135150170 /data01/CAR_M2/Software/local/lib/librt-2.17.so
2b8b053f6000-2b8b057f7000 rw-p 00000000 00:00 0
2b8b057f7000-2b8b05803000 r-xp 00000000 08:01 135149900 /data01/CAR_M2/Software/local/lib/libnss_files-2.17.so
2b8b05803000-2b8b05a02000 ---p 0000c000 08:01 135149900 /data01/CAR_M2/Software/local/lib/libnss_files-2.17.so
2b8b05a02000-2b8b05a03000 r--p 0000b000 08:01 135149900 /data01/CAR_M2/Software/local/lib/libnss_files-2.17.so
2b8b05a03000-2b8b05a04000 rw-p 0000c000 08:01 135149900 /data01/CAR_M2/Software/local/lib/libnss_files-2.17.so
2b8b05a04000-2b8c550b0000 rw-p 00000000 00:00 0
2b8c58000000-2b8c58021000 rw-p 00000000 00:00 0
2b8c58021000-2b8c5c000000 ---p 00000000 00:00 0
7fff306f1000-7fff31ebe000 rw-p 00000000 00:00 0 [stack]
7fff31ee3000-7fff31ee5000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
./prepare_chem.sh: line 45: 24700 Aborted (core dumped) ../chem/convert_emiss.exe &>convert_emiss_${dd}${hh}_d${domain}.log
Click to expand...
Thank you!!
 
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