Hello,
I am trying to build WRF in my machine (Arch Linux 4.18). I believe I have all the libraries setup.
I am getting error messages regarding 'ar' and some missiing header files. Below is the error compilation message.
Can anyone help solving the compile error?
Thank you.
I am trying to build WRF in my machine (Arch Linux 4.18). I believe I have all the libraries setup.
I am getting error messages regarding 'ar' and some missiing header files. Below is the error compilation message.
Can anyone help solving the compile error?
Thank you.
Code:
None of WRF_EM_CORE, WRF_NMM_CORE,
specified in shell environment....
==============================================================================================
V4.0.1
Compiling: WRF_EM_CORE
Linux birdhouse 4.18.12-arch1-1-ARCH #1 SMP PREEMPT Thu Oct 4 01:01:27 UTC 2018 x86_64 GNU/Linux
GNU Fortran (GCC) 8.2.1 20180831
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
==============================================================================================
setting parallel make -j 6
==============================================================================================
The following indicate the compilers selected to build the WRF system
Serial Fortran compiler (mostly for tool generation):
which SFC
/usr/bin/gfortran
Serial C compiler (mostly for tool generation):
which SCC
/usr/bin/gcc
Fortran compiler for the model source code:
which FC
/usr/bin/mpif90
Will use 'time' to report timing information
C compiler for the model source code:
which CC
/usr/bin/mpicc
==============================================================================================
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " ext
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
if [ 0 -eq 0 ] ; then \
( cd frame ; make -i -r externals ) ; \
else \
( cd frame ; make -i -r PLUSFLAG="-DWRFPLUS=1" externals ) ; \
fi
make[2]: Entering directory '/home/pigeon/Testsite/WRF/frame'
( cd /home/pigeon/Testsite/WRF/external/esmf_time_f90 ; \
make -j 6 FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" \
CPP="cpp -P -nostdinc -I/home/pigeon/Testsite/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=1 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/esmf_time_f90'
make[3]: Nothing to be done for 'default'.
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/esmf_time_f90'
( cd /home/pigeon/Testsite/WRF/external/io_netcdf ; \
make -j 6 NETCDFPATH="/usr" RANLIB="ranlib" CPP="cpp -P -nostdinc" \
CC="gcc" CFLAGS="-w -O3 -c -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" \
FC="gfortran -fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
( cd /home/pigeon/Testsite/WRF/external/ioapi_share ; \
make -i -r NATIVE_RWORDSIZE="4" RWORDSIZE="4" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/ioapi_share'
( /bin/rm -f ../../inc/wrf_io_flags.h foo_io_flags.h; \
/bin/cp wrf_io_flags.h foo_io_flags.h; \
if [ 4 -ne 4 ] ; then \
/bin/rm -f foo_io_flags.h; \
sed -e 's/104/105/' wrf_io_flags.h > foo_io_flags.h ;\
fi ; \
/bin/mv foo_io_flags.h ../../inc/wrf_io_flags.h )
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/ioapi_share'
( cd /home/pigeon/Testsite/WRF/external/io_grib_share ; \
make -j 6 CC="gcc" CFLAGS="-w -O3 -c -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="cpp -P -nostdinc" \
FC="gfortran -I. -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib_share'
make[4]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib_share'
ar ru ./libio_grib_share.a io_grib_share.o get_region_center.o gridnav.o open_file.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib ./libio_grib_share.a
make[4]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib_share'
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib_share'
( cd /home/pigeon/Testsite/WRF/external/io_grib1 ; \
make -j 6 CC="gcc" CFLAGS="-w -O3 -c -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="cpp -P -nostdinc" \
FC="gfortran -I. -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1'
Doing make archive on library subdirectory MEL_grib1
make[4]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1/MEL_grib1'
make[5]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1/MEL_grib1'
ar ru ../libio_grib1.a FTP_getfile.o apply_bitmap.o display_gribhdr.o gbyte.o grib_dec.o grib_enc.o grib_seek.o gribgetbds.o gribgetbms.o gribgetgds.o gribgetpds.o gribhdr2file.o gribputbds.o gribputgds.o gribputpds.o hdr_print.o init_dec_struct.o init_enc_struct.o init_gribhdr.o init_struct.o ld_dec_lookup.o ld_enc_input.o ld_enc_lookup.o ld_grib_origctrs.o make_default_grbfn.o make_grib_log.o map_lvl.o map_parm.o pack_spatial.o prt_inp_struct.o upd_child_errmsg.o prt_badmsg.o swap.o grib_uthin.o set_bytes.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib ../libio_grib1.a
make[5]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1/MEL_grib1'
make[4]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1/MEL_grib1'
Doing make archive on library subdirectory grib1_util
make[4]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1/grib1_util'
make[5]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1/grib1_util'
ar ru ../libio_grib1.a alloc_2d.o read_grib.o write_grib.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib ../libio_grib1.a
make[5]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1/grib1_util'
make[4]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1/grib1_util'
Doing make archive on library subdirectory WGRIB
make[4]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1/WGRIB'
make[4]: Nothing to be done for 'archive'.
make[4]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1/WGRIB'
make[4]: Entering directory '/home/pigeon/Testsite/WRF/external/io_grib1'
ar ru ./libio_grib1.a grib1_routines.o gribmap.o io_grib1.o trim.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib ./libio_grib1.a
make[4]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1'
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_grib1'
( cd /home/pigeon/Testsite/WRF/external/io_int ; \
make -j 6 CC="mpicc -DFSEEKO64_OK " CFLAGS_LOCAL="-w -O3 -c " RM="rm -f" RANLIB="ranlib" CPP="cpp -P -nostdinc" \
FC="mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" FGREP="fgrep -iq" \
TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" AR="ar" ARFLAGS="ru" ARCHFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=1 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" all )
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/io_int'
if [ -f ../../frame/pack_utils.o -a -f ../../frame/clog.o ] ; then \
mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp -I../ioapi_share -o diffwrf diffwrf.f \
../../frame/pack_utils.o ../../frame/module_internal_header_util.o ../../frame/module_driver_constants.o ../../frame/module_machine.o ../../frame/module_wrf_error.o ../../frame/wrf_debug.o libwrfio_int.a ; \
fi
mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp -o test_io_idx test_io_idx.f -L. -lwrfio_int
/usr/bin/ld: /usr/lib/gcc/x86_64/-usrpc/-binlinux/-ldgnu:/ 8.2.1//usr./.lib//.gcc.//x86_64.-.pc/-.linux.-/gnulib//8.2.1Scrt1.o/:. .in/ .function. /`._start.'/:.
.(/.libtext/+Scrt1.o0x24:) :in undefinedfunction reference` _startto' :`
main('.
text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
collect2: error: ld returned 1 exit status
make[3]: [makefile:85: test_io_idx] Error 1 (ignored)
make[3]: [makefile:76: diffwrf] Error 1 (ignored)
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_int'
( cd /home/pigeon/Testsite/WRF/external/fftpack/fftpack5 ; \
make -j 6 FC="gfortran" FFLAGS=" -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" AR="ar" \
ARFLAGS="ru" CPP="cpp -P -nostdinc" CPPFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=1 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -I. -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT " RM="rm -f" )
make[3]: Entering directory '/home/pigeon/Testsite/WRF/external/fftpack/fftpack5'
ar ru libfftpack.a c1f2kb.o cfft1b.o cmf3kf.o cosqb1.o costmi.o dcosq1f.o dfftb1.o mradb2.o mrfti1.o r1fgkf.o rfft2i.o sinqmi.o z1f2kf.o zfft1f.o zmf4kb.o c1f2kf.o cfft1f.o cmf4kb.o cosqf1.o d1f2kb.o dcosq1i.o dfftf1.o mradb3.o msntb1.o r4_factor.o rfftb1.o sint1b.o z1f3kb.o zfft1i.o zmf4kf.o c1f3kb.o cfft1i.o cmf4kf.o cosqmb.o d1f2kf.o dcosqb1.o dffti1.o mradb4.o msntf1.o r4_mcfti1.o rfftf1.o sint1f.o z1f3kf.o zfft2b.o zmf5kb.o c1f3kf.o cfft2b.o cmf5kb.o cosqmf.o d1f3kb.o dcosqf1.o dsint1b.o mradb5.o r1f2kb.o r4_tables.o rffti1.o sint1i.o z1f4kb.o zfft2f.o zmf5kf.o c1f4kb.o cfft2f.o cmf5kf.o cosqmi.o d1f3kf.o dcost1b.o dsint1f.o mradbg.o r1f2kf.o r8_factor.o rfftmb.o sintb1.o z1f4kf.o zfft2i.o zmfgkb.o c1f4kf.o cfft2i.o cmfgkb.o cost1b.o d1f4kb.o dcost1f.o dsint1i.o mradf2.o r1f3kb.o r8_mcfti1.o rfftmf.o sintf1.o z1f5kb.o zfftmb.o zmfgkf.o c1f5kb.o cfftmb.o cmfgkf.o cost1f.o d1f4kf.o dcost1i.o dsintb1.o mradf3.o r1f3kf.o r8_tables.o rfftmi.o sintmb.o z1f5kf.o zfftmf.o zmfm1b.o c1f5kf.o cfftmf.o cmfm1b.o cost1i.o d1f5kb.o dcostb1.o dsintf1.o mradf4.o r1f4kb.o rfft1b.o sinq1b.o sintmf.o z1fgkb.o zfftmi.o zmfm1f.o c1fgkb.o cfftmi.o cmfm1f.o costb1.o d1f5kf.o dcostf1.o mcsqb1.o mradf5.o r1f4kf.o rfft1f.o sinq1f.o sintmi.o z1fgkf.o zmf2kb.o c1fgkf.o cmf2kb.o cosq1b.o costf1.o d1fgkb.o dfft1b.o mcsqf1.o mradfg.o r1f5kb.o rfft1i.o sinq1i.o xercon.o z1fm1b.o zmf2kf.o c1fm1b.o cmf2kf.o cosq1f.o costmb.o d1fgkf.o dfft1f.o mcstb1.o mrftb1.o r1f5kf.o rfft2b.o sinqmb.o xerfft.o z1fm1f.o zmf3kb.o c1fm1f.o cmf3kb.o cosq1i.o costmf.o dcosq1b.o dfft1i.o mcstf1.o mrftf1.o r1fgkb.o rfft2f.o sinqmf.o z1f2kb.o zfft1b.o zmf3kf.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libfftpack.a
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/external/fftpack/fftpack5'
( if [ ! -e /home/pigeon/Testsite/WRF/tools/gen_comms.c ] ; then \
/bin/cp /home/pigeon/Testsite/WRF/tools/gen_comms_warning /home/pigeon/Testsite/WRF/tools/gen_comms.c ; \
cat /home/pigeon/Testsite/WRF/external/RSL_LITE/gen_comms.c >> /home/pigeon/Testsite/WRF/tools/gen_comms.c ; fi )
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
cat /home/pigeon/Testsite/WRF/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/frame'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " toolsdir
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
if [ 0 -eq 0 ] ; then \
( cd tools ; make -i -r CC_TOOLS_CFLAGS="-DNMM_CORE=0" CC_TOOLS="gcc -DIWORDSIZE=4 -DMAX_HISTORY=25" ) ; \
else \
( cd tools ; make -i -r CC_TOOLS_CFLAGS="-DNMM_CORE=0" CC_TOOLS="gcc -DIWORDSIZE=4 -DMAX_HISTORY=25 -DWRFPLUS=1" ) ; \
fi
make[2]: Entering directory '/home/pigeon/Testsite/WRF/tools'
make[2]: 'registry' is up to date.
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/tools'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
/bin/rm -f main/libwrflib.a main/libwrflib.lib
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " framework
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
( cd frame ; make -i -r -j 6 LLIST="" framework ; \
cd ../external/io_netcdf ; \
make -i -r NETCDFPATH="/usr" \
FC="mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" RANLIB="ranlib" \
CPP="cpp -P -nostdinc" LDFLAGS="-fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" ESMF_IO_LIB_EXT="-L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/home/pigeon/Testsite/WRF/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \
cd ../io_netcdf ; \
make -i -r NETCDFPATH="/usr" \
FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" RANLIB="ranlib" \
CPP="cpp -P -nostdinc" LDFLAGS="-fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" ESMF_IO_LIB_EXT="-L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/home/pigeon/Testsite/WRF/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_pio ; \
echo SKIPPING PIO BUILD make -i -r NETCDFPATH="" \
FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" RANLIB="ranlib" \
CPP="cpp -P -nostdinc" LDFLAGS="-fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" ESMF_IO_LIB_EXT="-L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/home/pigeon/Testsite/WRF/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_int ; \
make -i -r SFC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " \
FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" \
RANLIB="ranlib" CPP="cpp -P -nostdinc -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" DM_FC="mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 "\
TRADFLAG="-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT" ESMF_IO_LIB_EXT="-L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time" \
ESMF_MOD_DEPENDENCE="/home/pigeon/Testsite/WRF/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf ; \
cd ../../frame )
make[2]: Entering directory '/home/pigeon/Testsite/WRF/frame'
ar ru ../main/libwrflib.a module_driver_constants.o module_domain_type.o module_streams.o module_domain.o module_integrate.o module_timing.o module_configure.o module_tiles.o module_machine.o module_nesting.o module_wrf_error.o module_state_description.o module_sm.o module_io.o module_comm_dm.o module_comm_dm_0.o module_comm_dm_1.o module_comm_dm_2.o module_comm_dm_3.o module_comm_dm_4.o module_comm_nesting_dm.o module_dm.o module_quilt_outbuf_ops.o module_io_quilt.o module_intermediate_nmm.o module_cpl.o module_cpl_oasis3.o module_clear_halos.o wrf_num_bytes_between.o wrf_shutdown.o wrf_debug.o libmassv.o collect_on_comm.o hires_timer.o clog.o nl_get_0_routines.o nl_get_1_routines.o nl_get_2_routines.o nl_get_3_routines.o nl_get_4_routines.o nl_get_5_routines.o nl_get_6_routines.o nl_get_7_routines.o nl_set_0_routines.o nl_set_1_routines.o nl_set_2_routines.o nl_set_3_routines.o nl_set_4_routines.o nl_set_5_routines.o nl_set_6_routines.o nl_set_7_routines.o module_alloc_space_0.o module_alloc_space_1.o module_alloc_space_2.o module_alloc_space_3.o module_alloc_space_4.o module_alloc_space_5.o module_alloc_space_6.o module_alloc_space_7.o module_alloc_space_8.o module_alloc_space_9.o
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creating ../main/libwrflib.a
ranlib ../main/libwrflib.a
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/frame'
make[2]: Entering directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
x=`echo "mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp" | awk '{print $1}'` ; export x ; \
if [ $x = "gfortran" ] ; then \
echo removing external declaration of iargc for gfortran ; \
cpp -P -nostdinc -P -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -I/usr/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
else \
cpp -P -nostdinc -P -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -I/usr/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
fi
mpif90 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp -c -I/usr/include -I../ioapi_share diffwrf.f
diffwrf.f:51:6:
use wrf_data
1
Fatal Error: Can't open module file 'wrf_data.mod' for reading at (1): No such file or directory
compilation terminated.
make[2]: [makefile:44: diffwrf] Error 1 (ignored)
diffwrf io_netcdf is being built now.
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[2]: [makefile:45: diffwrf] Error 1 (ignored)
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
make[2]: Entering directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_netcdf'
SKIPPING PIO BUILD make -i -r NETCDFPATH= FC=gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp RANLIB=ranlib CPP=cpp -P -nostdinc LDFLAGS=-fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 TRADFLAG=-traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT ESMF_IO_LIB_EXT=-L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time LIB_LOCAL= ESMF_MOD_DEPENDENCE=/home/pigeon/Testsite/WRF/external/esmf_time_f90/module_utility.o AR=INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR
make[2]: Entering directory '/home/pigeon/Testsite/WRF/external/io_int'
if [ -f ../../frame/pack_utils.o -a -f ../../frame/clog.o ] ; then \
gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -fopenmp -I../ioapi_share -o diffwrf diffwrf.f \
../../frame/pack_utils.o ../../frame/module_internal_header_util.o ../../frame/module_driver_constants.o ../../frame/module_machine.o ../../frame/module_wrf_error.o ../../frame/wrf_debug.o -L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time libwrfio_int.a ; \
fi
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[2]: [makefile:76: diffwrf] Error 1 (ignored)
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/external/io_int'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " shared
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
if [ "`echo -j 6 | sed -e 's/-j//g' -e 's/ \+//g'`" -gt "6" ] ; then \
if [ 0 -eq 0 ] ; then \
( cd share ; make -i -r -j 6 PERTMOD=" " ) ; \
else \
( cd share ; make -i -r -j 6 PERTMOD="../dyn_em/module_bc_em.o ../wrftladj/mediation_pertmod_io.o" ) ; \
fi \
else \
if [ 0 -eq 0 ] ; then \
( cd share ; make -i -r -j 6 PERTMOD=" " ) ; \
else \
( cd share ; make -i -r -j 6 PERTMOD="../dyn_em/module_bc_em.o ../wrftladj/mediation_pertmod_io.o" ) ; \
fi \
fi
make[2]: Entering directory '/home/pigeon/Testsite/WRF/share'
rm -f landread.o
mpicc -DFSEEKO64_OK -o landread.o -c -w -O3 -c -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0 landread.c
landread.c:68:10: fatal error: rpc/types.h: No such file or directory
#include <rpc/types.h>
^~~~~~~~~~~~~
compilation terminated.
make[2]: [../configure.wrf:372: landread.o] Error 1 (ignored)
if [ 0 -eq 1 ] ; then \
make -i -r nmm_contrib ; \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o module_trajectory.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
else \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o module_trajectory.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
fi
ar: `u' modifier ignored since `D' is the default (see `U')
ar: landread.o: No such file or directory
make[2]: [Makefile:79: shared] Error 1 (ignored)
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/share'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " physics
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
if [ 0 -eq 0 ] ; then \
( cd phys ; make -i -r CF2=" " ) ; \
else \
( cd phys ; make -i -r CF2="../chem/module_data_mosaic_asect.o" ) ; \
fi
make[2]: Entering directory '/home/pigeon/Testsite/WRF/phys'
if [ 0 -eq 1 ] ; then \
make -i -r -j 6 nmm_contrib ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfsedmf.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_shcu_nscv.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_wrfdrv.o module_cu_gf_deep.o module_cu_gf_sh.o module_cu_ksas.o module_cu_nsas.o module_cu_sas.o module_cu_scalesas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_p3.o module_mp_morr_two_moment_aero.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_effective_radius.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_rrtmg_lwk.o module_ra_rrtmg_swk.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_gecros.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_dust_emis.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
\
module_diag_refl.o ; \
else \
make -i -r -j 6 non_nmm ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfsedmf.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_shcu_nscv.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_wrfdrv.o module_cu_gf_deep.o module_cu_gf_sh.o module_cu_ksas.o module_cu_nsas.o module_cu_sas.o module_cu_scalesas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_p3.o module_mp_morr_two_moment_aero.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_effective_radius.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_rrtmg_lwk.o module_ra_rrtmg_swk.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_gecros.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_dust_emis.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
module_fr_fire_driver.o module_fr_fire_driver_wrf.o module_fr_fire_atm.o module_fr_fire_model.o module_fr_fire_core.o module_fr_fire_phys.o module_fr_fire_util.o \
module_diag_afwa.o module_diag_cl.o module_diag_functions.o module_diag_hailcast.o module_diag_misc.o module_diag_rasm.o module_diag_pld.o module_diag_zld.o module_diag_trad_fields.o ; \
fi
make[3]: Entering directory '/home/pigeon/Testsite/WRF/phys'
make[3]: Nothing to be done for 'non_nmm'.
make[3]: Leaving directory '/home/pigeon/Testsite/WRF/phys'
ar: `u' modifier ignored since `D' is the default (see `U')
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/phys'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " chemics ; fi
if [ 1 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " em_core ; fi
make[1]: Entering directory '/home/pigeon/Testsite/WRF'
--------------------------------------
if [ 0 -eq 0 ] ; then \
CF= ; \
else \
CF="../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_driver.o ../chem/module_input_tracer.o ../chem/module_aerosols_soa_vbs.o" ; \
fi
( cd dyn_em ; make -i -r -j 6 CF="" )
make[2]: Entering directory '/home/pigeon/Testsite/WRF/dyn_em'
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o module_after_all_rk_steps.o init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[2]: Leaving directory '/home/pigeon/Testsite/WRF/dyn_em'
make[1]: Leaving directory '/home/pigeon/Testsite/WRF'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " nmm_core ; fi
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " wrf_hydro ; fi
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " SOLVER=em em_wrf )
make[1]: Entering directory '/home/pigeon/Testsite/WRF/main'
ranlib libwrflib.a
mpif90 -o wrf.exe -fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 wrf.o ../main/module_wrf_top.o libwrflib.a /home/pigeon/Testsite/WRF/external/fftpack/fftpack5/libfftpack.a /home/pigeon/Testsite/WRF/external/io_grib1/libio_grib1.a /home/pigeon/Testsite/WRF/external/io_grib_share/libio_grib_share.a /home/pigeon/Testsite/WRF/external/io_int/libwrfio_int.a -L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time /home/pigeon/Testsite/WRF/external/RSL_LITE/librsl_lite.a /home/pigeon/Testsite/WRF/frame/module_internal_header_util.o /home/pigeon/Testsite/WRF/frame/pack_utils.o -L/home/pigeon/Testsite/WRF/external/io_netcdf -lwrfio_nf -L/usr/lib -lnetcdff -lnetcdf
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[1]: [Makefile:17: em_wrf] Error 1 (ignored)
make[1]: Leaving directory '/home/pigeon/Testsite/WRF/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started: Tue Oct 30 02:34:09 UTC 2018
build completed: Tue Oct 30 02:34:11 UTC 2018
--------------------------------------
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory '/home/pigeon/Testsite/WRF/main'
ranlib libwrflib.a
mpif90 -o ndown.exe -fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 ndown_em.o ../dyn_em/module_initialize_real.o libwrflib.a /home/pigeon/Testsite/WRF/external/fftpack/fftpack5/libfftpack.a /home/pigeon/Testsite/WRF/external/io_grib1/libio_grib1.a /home/pigeon/Testsite/WRF/external/io_grib_share/libio_grib_share.a /home/pigeon/Testsite/WRF/external/io_int/libwrfio_int.a -L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time /home/pigeon/Testsite/WRF/external/RSL_LITE/librsl_lite.a /home/pigeon/Testsite/WRF/frame/module_internal_header_util.o /home/pigeon/Testsite/WRF/frame/pack_utils.o -L/home/pigeon/Testsite/WRF/external/io_netcdf -lwrfio_nf -L/usr/lib -lnetcdff -lnetcdf
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[1]: [Makefile:33: em_real] Error 1 (ignored)
mpif90 -o tc.exe -fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 tc_em.o ../dyn_em/module_initialize_real.o libwrflib.a /home/pigeon/Testsite/WRF/external/fftpack/fftpack5/libfftpack.a /home/pigeon/Testsite/WRF/external/io_grib1/libio_grib1.a /home/pigeon/Testsite/WRF/external/io_grib_share/libio_grib_share.a /home/pigeon/Testsite/WRF/external/io_int/libwrfio_int.a -L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time /home/pigeon/Testsite/WRF/external/RSL_LITE/librsl_lite.a /home/pigeon/Testsite/WRF/frame/module_internal_header_util.o /home/pigeon/Testsite/WRF/frame/pack_utils.o -L/home/pigeon/Testsite/WRF/external/io_netcdf -lwrfio_nf -L/usr/lib -lnetcdff -lnetcdf
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[1]: [Makefile:34: em_real] Error 1 (ignored)
mpif90 -o real.exe -fopenmp -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 real_em.o ../dyn_em/module_initialize_real.o libwrflib.a /home/pigeon/Testsite/WRF/external/fftpack/fftpack5/libfftpack.a /home/pigeon/Testsite/WRF/external/io_grib1/libio_grib1.a /home/pigeon/Testsite/WRF/external/io_grib_share/libio_grib_share.a /home/pigeon/Testsite/WRF/external/io_int/libwrfio_int.a -L/home/pigeon/Testsite/WRF/external/esmf_time_f90 -lesmf_time /home/pigeon/Testsite/WRF/external/RSL_LITE/librsl_lite.a /home/pigeon/Testsite/WRF/frame/module_internal_header_util.o /home/pigeon/Testsite/WRF/frame/pack_utils.o -L/home/pigeon/Testsite/WRF/external/io_netcdf -lwrfio_nf -L/usr/lib -lnetcdff -lnetcdf
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.1/../../../../lib/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[1]: [Makefile:35: em_real] Error 1 (ignored)
make[1]: Leaving directory '/home/pigeon/Testsite/WRF/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/pigeon/Testsite/WRF/external/esmf_time_f90 -I/home/pigeon/Testsite/WRF/main -I/home/pigeon/Testsite/WRF/external/io_netcdf -I/home/pigeon/Testsite/WRF/external/io_int -I/home/pigeon/Testsite/WRF/frame -I/home/pigeon/Testsite/WRF/share -I/home/pigeon/Testsite/WRF/phys -I/home/pigeon/Testsite/WRF/wrftladj -I/home/pigeon/Testsite/WRF/chem -I/home/pigeon/Testsite/WRF/inc -I/usr/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ESMF ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
ln -sf ../../run/p3_lookup_table_1.dat-v2.8.2 . ; \
ln -sf ../../run/p3_lookup_table_2.dat-v2.8.2 . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi ) ; \
( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/capacity.asc . ; \
ln -sf ../../run/coeff_p.asc . ; \
ln -sf ../../run/coeff_q.asc . ; \
ln -sf ../../run/constants.asc . ; \
ln -sf ../../run/masses.asc . ; \
ln -sf ../../run/termvels.asc . ; \
ln -sf ../../run/kernels.asc_s_0_03_0_9 . ; \
ln -sf ../../run/kernels_z.asc . ; \
ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ; \
ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
ln -sf ../../run/p3_lookup_table_1.dat-v2.8.2 . ; \
ln -sf ../../run/p3_lookup_table_2.dat-v2.8.2 . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
( cd run ; if test -f namelist.input ; then \
/bin/cp -f namelist.input namelist.input.backup.`date +%Y-%m-%d_%H_%M_%S` ; fi ; \
/bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )
==========================================================================
build started: Tue Oct 30 02:34:09 UTC 2018
build completed: Tue Oct 30 02:34:12 UTC 2018
---> Problems building executables, look for errors in the build log <---
==========================================================================