Error in WRFDA 4.6.1 compilation with RTTOV 12.1

[irok]

I am facing the following error when compiling WRFDA 4.6.1 4DVAR with RTTOV12.1.
/usr/bin/ld: cannot find -lhdf5_hl_f90cstub: No such file or directory
/usr/bin/ld: cannot find -lhdf5_f90cstub: No such file or directory
executables other than da_wrfvar.exe are created. I have successfully installed RTTOV12.1 and passed all the tests. I have also successfully compiled 4dvar with out the RTTOV. i am attaching the log file for further reference.

Thank you.

 

[MariaB]

Hi! Did you get this resolved? I'm currently experiencing the same issue and I'm not sure where to start.

 

[irok]

No. i think the issue is due to HDF5 library, but i am not sure.

 

[dongdada]

I encountered the following errors during compilation:
/usr/bin/ld: cannot find -lhdf5_hl_f90cstub
/usr/bin/ld: cannot find -lhdf5_f90cstub
/usr/bin/ld: cannot find -lhdf5_hl_cpp
collect2: error: ld returned 1 exit status
To resolve this issue, I created symbolic links for the missing HDF5 libraries:
cd $HDF5/lib
ln -s libhdf5hl_fortran.so libhdf5_hl_f90cstub.so
ln -s libhdf5hl_fortran.a libhdf5_hl_f90cstub.a
ln -s libhdf5_fortran.so libhdf5_f90cstub.so
ln -s libhdf5_fortran.a libhdf5_f90cstub.a
ln -s libhdf5hl_fortran.so libhdf5_hl_cpp.so
ln -s libhdf5hl_fortran.a libhdf5_hl_cpp.a
After applying these fixes, the compilation proceeded without further errors.

[lab35dongxh@mu01 WRFDA]$ ls -l var/build/*exe var/obsproc/src/obsproc.exe | wc -l
44
binggo!

 

[William.Hatheway]

I encountered the following errors during compilation:
/usr/bin/ld: cannot find -lhdf5_hl_f90cstub
/usr/bin/ld: cannot find -lhdf5_f90cstub
/usr/bin/ld: cannot find -lhdf5_hl_cpp
collect2: error: ld returned 1 exit status
To resolve this issue, I created symbolic links for the missing HDF5 libraries:
cd $HDF5/lib
ln -s libhdf5hl_fortran.so libhdf5_hl_f90cstub.so
ln -s libhdf5hl_fortran.a libhdf5_hl_f90cstub.a
ln -s libhdf5_fortran.so libhdf5_f90cstub.so
ln -s libhdf5_fortran.a libhdf5_f90cstub.a
ln -s libhdf5hl_fortran.so libhdf5_hl_cpp.so
ln -s libhdf5hl_fortran.a libhdf5_hl_cpp.a
After applying these fixes, the compilation proceeded without further errors.

[lab35dongxh@mu01 WRFDA]$ ls -l var/build/*exe var/obsproc/src/obsproc.exe | wc -l
44
binggo!

another way is to export the variable HDF5 and set it equal to the path of the grib2 files

export HDF5=/path/to/library/files/grib2

 

[irok]

I encountered the following errors during compilation:
/usr/bin/ld: cannot find -lhdf5_hl_f90cstub
/usr/bin/ld: cannot find -lhdf5_f90cstub
/usr/bin/ld: cannot find -lhdf5_hl_cpp
collect2: error: ld returned 1 exit status
To resolve this issue, I created symbolic links for the missing HDF5 libraries:
cd $HDF5/lib
ln -s libhdf5hl_fortran.so libhdf5_hl_f90cstub.so
ln -s libhdf5hl_fortran.a libhdf5_hl_f90cstub.a
ln -s libhdf5_fortran.so libhdf5_f90cstub.so
ln -s libhdf5_fortran.a libhdf5_f90cstub.a
ln -s libhdf5hl_fortran.so libhdf5_hl_cpp.so
ln -s libhdf5hl_fortran.a libhdf5_hl_cpp.a
After applying these fixes, the compilation proceeded without further errors.

[lab35dongxh@mu01 WRFDA]$ ls -l var/build/*exe var/obsproc/src/obsproc.exe | wc -l
44
binggo!

Sorry for the late reply.
I checked my HDF5 installation, there are no files with f90cstub. Is there a problem with my HDF5 installation? But the WRFDA compiles successfully without the RTTOV.