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Failed to build on cygwin

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G

GarryLai

New member
Describe the bug
Failed to build WRF on cygwin but it doesn't display any error.
It just come out with "Command exited with non-zero status 1" but no describe.

To Reproduce
Do the step on doc/README.cygwin.md
Any package, Cygwin, WRF(using em_real) is using the latest version, OS is Windows 7

Expected behavior
Code: 
make[1]: Entering directory '/WRF'
--------------------------------------
if [ 0  -eq 0 ] ; then \
        CF= ; \
else \
        CF="../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_
driver.o ../chem/module_input_tracer.o ../chem/module_aerosols_soa_vbs.o" ; \
fi
( cd dyn_em ; make -i -r -j 2 CF="" )
make[2]: Entering directory '/WRF/dyn_em'
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big
_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o modul
e_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o
 module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs
_driver.o module_stoch.o module_after_all_rk_steps.o  init_modules_em.o solve_em.o start_em.o shift_
domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
make[2]: Leaving directory '/WRF/dyn_em'
make[1]: Leaving directory '/WRF'
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time_
f90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/p
hys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " nmm_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time_
f90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/p
hys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " wrf_hydro ; fi
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time_f
90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/ph
ys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " SOLVER=em em_wrf )
make[1]: Entering directory '/WRF/main'
ranlib  libwrflib.a
time mpif90 -o wrf.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -
fconvert=big-endian -frecord-marker=4    wrf.o ../main/module_wrf_top.o libwrflib.a      /WRF/extern
al/fftpack/fftpack5/libfftpack.a /WRF/external/io_grib1/libio_grib1.a /WRF/external/io_grib_share/li
bio_grib_share.a /WRF/external/io_int/libwrfio_int.a /WRF/external/esmf_time_f90/libesmf_time.a ../e
xternal/RSL_LITE/librsl_lite.a /WRF/frame/module_internal_header_util.o /WRF/frame/pack_utils.o
 /WRF/external/io_netcdf/libwrfio_nf.a /usr/lib/libnetcdf.dll.a -L /usr -lnetcdff -lnetcdf -lnetcdf
-ltirpc -lhdf5_hl -lhdf5 -lm -lz
Command exited with non-zero status 1
0.38user 0.66system 0:01.22elapsed 86%CPU (0avgtext+0avgdata 83308maxresident)k
0inputs+0outputs (24308major+0minor)pagefaults 0swaps
make[1]: [Makefile:17: em_wrf] Error 1 (已忽略）
make[1]: Leaving directory '/WRF/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
  ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time
_f90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/
phys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started:   2020年08月15日 19:07:48
build completed: 2020年08月15日 19:07:57
--------------------------------------
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time_f
90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/ph
ys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory '/WRF/main'
ranlib  libwrflib.a
time mpif90 -o ndown.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none
 -fconvert=big-endian -frecord-marker=4    ndown_em.o  ../dyn_em/module_initialize_real.o libwrflib.
a      /WRF/external/fftpack/fftpack5/libfftpack.a /WRF/external/io_grib1/libio_grib1.a /WRF/externa
l/io_grib_share/libio_grib_share.a /WRF/external/io_int/libwrfio_int.a /WRF/external/esmf_time_f90/l
ibesmf_time.a ../external/RSL_LITE/librsl_lite.a /WRF/frame/module_internal_header_util.o /WRF/frame
/pack_utils.o      /WRF/external/io_netcdf/libwrfio_nf.a /usr/lib/libnetcdf.dll.a -L /usr -lnetcdff
-lnetcdf -lnetcdf -ltirpc -lhdf5_hl -lhdf5 -lm -lz
Command exited with non-zero status 1
0.31user 0.70system 0:01.24elapsed 81%CPU (0avgtext+0avgdata 80820maxresident)k
0inputs+0outputs (23871major+0minor)pagefaults 0swaps
make[1]: [Makefile:33: em_real] Error 1 (已忽略）
time mpif90 -o tc.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -f
convert=big-endian -frecord-marker=4    tc_em.o  ../dyn_em/module_initialize_real.o libwrflib.a
 /WRF/external/fftpack/fftpack5/libfftpack.a /WRF/external/io_grib1/libio_grib1.a /WRF/external/io_g
rib_share/libio_grib_share.a /WRF/external/io_int/libwrfio_int.a /WRF/external/esmf_time_f90/libesmf
_time.a ../external/RSL_LITE/librsl_lite.a /WRF/frame/module_internal_header_util.o /WRF/frame/pack_
utils.o      /WRF/external/io_netcdf/libwrfio_nf.a /usr/lib/libnetcdf.dll.a -L /usr -lnetcdff -lnetc
df -lnetcdf -ltirpc -lhdf5_hl -lhdf5 -lm -lz
Command exited with non-zero status 1
0.38user 0.70system 0:01.19elapsed 91%CPU (0avgtext+0avgdata 80580maxresident)k
0inputs+0outputs (23811major+0minor)pagefaults 0swaps
make[1]: [Makefile:34: em_real] Error 1 (已忽略）
time mpif90 -o real.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none
-fconvert=big-endian -frecord-marker=4    real_em.o ../dyn_em/module_initialize_real.o libwrflib.a
    /WRF/external/fftpack/fftpack5/libfftpack.a /WRF/external/io_grib1/libio_grib1.a /WRF/external/i
o_grib_share/libio_grib_share.a /WRF/external/io_int/libwrfio_int.a /WRF/external/esmf_time_f90/libe
smf_time.a ../external/RSL_LITE/librsl_lite.a /WRF/frame/module_internal_header_util.o /WRF/frame/pa
ck_utils.o      /WRF/external/io_netcdf/libwrfio_nf.a /usr/lib/libnetcdf.dll.a -L /usr -lnetcdff -ln
etcdf -lnetcdf -ltirpc -lhdf5_hl -lhdf5 -lm -lz
Command exited with non-zero status 1
0.38user 0.67system 0:01.30elapsed 81%CPU (0avgtext+0avgdata 80740maxresident)k
0inputs+0outputs (23851major+0minor)pagefaults 0swaps
make[1]: [Makefile:35: em_real] Error 1 (已忽略）
make[1]: Leaving directory '/WRF/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
  ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -I/WRF/external/esmf_time
_f90  -I/WRF/main -I/WRF/external/io_netcdf -I/WRF/external/io_int -I/WRF/frame -I/WRF/share -I/WRF/
phys -I/WRF/wrftladj -I/WRF/chem -I/WRF/inc -I/usr/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ES
MF ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DA
TA RRTMG_SW_DATA ; \
               ln -sf ../../run/ETAMPNEW_DATA . ;                      \
               ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;        \
               ln -sf ../../run/RRTM_DATA . ;                          \
               ln -sf ../../run/RRTMG_LW_DATA . ;                      \
               ln -sf ../../run/RRTMG_SW_DATA . ;                      \
               ln -sf ../../run/CAM_ABS_DATA . ;                       \
               ln -sf ../../run/CAM_AEROPT_DATA . ;                    \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;   \
               ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_DRDSDT0_DATA . ;                   \
               ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_KAPPA_DATA . ;                     \
               ln -sf ../../run/CLM_TAU_DATA . ;                       \
               ln -sf ../../run/ozone.formatted . ;                    \
               ln -sf ../../run/ozone_lat.formatted . ;                \
               ln -sf ../../run/ozone_plev.formatted . ;               \
               ln -sf ../../run/aerosol.formatted . ;                  \
               ln -sf ../../run/aerosol_lat.formatted . ;              \
               ln -sf ../../run/aerosol_lon.formatted . ;              \
               ln -sf ../../run/aerosol_plev.formatted . ;             \
               ln -sf ../../run/CCN_ACTIVATE.BIN . ;                   \
               ln -sf ../../run/p3_lookup_table_1.dat-v4.1 . ;         \
               ln -sf ../../run/p3_lookup_table_2.dat-v4.1 . ;         \
               ln -sf ../../run/HLC.TBL . ;                            \
               ln -sf ../../run/wind-turbine-1.tbl . ;                 \
               ln -sf ../../run/ishmael-gamma-tab.bin . ;              \
               ln -sf ../../run/ishmael-qi-qc.bin . ;                  \
               ln -sf ../../run/ishmael-qi-qr.bin . ;                  \
               ln -sf ../../run/BROADBAND_CLOUD_GODDARD.bin . ;        \
               if [ 4 -eq 8 ] ; then                        \
                  ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;   \
                  ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \

                  ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA         ;   \
                  ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;   \
                  ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;   \
               fi ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRT
MG_SW_DATA ;    \
             ln -sf ../../run/ETAMPNEW_DATA . ;                     \
             ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;       \
             ln -sf ../../run/RRTM_DATA . ;                         \
             ln -sf ../../run/RRTMG_LW_DATA . ;                     \
             ln -sf ../../run/RRTMG_SW_DATA . ;                     \
             ln -sf ../../run/CAM_ABS_DATA . ;                      \
             ln -sf ../../run/CAM_AEROPT_DATA . ;                   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;  \
             ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_DRDSDT0_DATA . ;                  \
             ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_KAPPA_DATA . ;                    \
             ln -sf ../../run/CLM_TAU_DATA . ;                      \
             ln -sf ../../run/ozone.formatted . ;                   \
             ln -sf ../../run/ozone_lat.formatted . ;               \
             ln -sf ../../run/ozone_plev.formatted . ;              \
             ln -sf ../../run/aerosol.formatted . ;                 \
             ln -sf ../../run/aerosol_lat.formatted . ;             \
             ln -sf ../../run/aerosol_lon.formatted . ;             \
             ln -sf ../../run/aerosol_plev.formatted . ;            \
             ln -sf ../../run/capacity.asc . ;                      \
             ln -sf ../../run/coeff_p.asc . ;                       \
             ln -sf ../../run/coeff_q.asc . ;                       \
             ln -sf ../../run/constants.asc . ;                     \
             ln -sf ../../run/masses.asc . ;                        \
             ln -sf ../../run/termvels.asc . ;                      \
             ln -sf ../../run/kernels.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/kernels_z.asc . ;                     \
             ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ;           \
             ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ;          \
             ln -sf ../../run/CCN_ACTIVATE.BIN . ;                  \
             ln -sf ../../run/p3_lookup_table_1.dat-v4.1 . ;        \
             ln -sf ../../run/p3_lookup_table_2.dat-v4.1 . ;        \
             ln -sf ../../run/HLC.TBL . ;                           \
             ln -sf ../../run/wind-turbine-1.tbl . ;                \
             ln -sf ../../run/ishmael-gamma-tab.bin . ;             \
             ln -sf ../../run/ishmael-qi-qc.bin . ;                 \
             ln -sf ../../run/ishmael-qi-qr.bin . ;                 \
             ln -sf ../../run/BROADBAND_CLOUD_GODDARD.bin . ;       \
             if [ 4 -eq 8 ] ; then                       \
                ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;  \
                ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \
                ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ;          \
                ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;  \
                ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;  \
             fi )
( cd test/em_real ; if test -d ../../run/SBM_input_33 ; then                            \
             ln -sf ../../run/SBM_input_33 . ;                                          \
             ln -sf ../../run/scattering_tables_2layer_high_quad_1dT_1%fw_110 . ;       \
             fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
( cd run ; if test -f namelist.input ; then \
        /bin/cp -f namelist.input namelist.input.backup.`date +%Y-%m-%d_%H_%M_%S` ; fi ; \
        /bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )

==========================================================================
build started:   2020年08月15日 19:07:48
build completed: 2020年08月15日 19:08:03

---> Problems building executables, look for errors in the build log  <---

==========================================================================
 
Hi,
Are you building WRF on a Linux dual/split configuration on your system? WRF is not supported on a Windows environment. If you are, indeed, building on a linux-type environment, please follow these steps:
1) ./clean -a
2) reconfigure
3) recompile with this command:
./compile em_real >& compile.txt

and then attach that compile.txt and configure.wrf files so that I can take a look? For information on attaching files, see the home page of this forum. Thanks!
 
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