Thank you for these maps, I think this issue is related to this line in the irrigation code:
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! If OPT_IRRM = 0 and if methods are unknown for certain area, then use sprinkler irrigation method
It happens on cropland and when irrigation fraction > than IRR_FRAC:
( IF((CROPLU .EQV. .TRUE.) .AND. (IRRFRA .GE. parameters%IRR_FRAC) .AND. &)
but all these irrigation method fraction is 0, then it will choose for sprinkler irrigation by default
I suggest you can look into the spatial distribution of irrigation fraction, cropland distribution, these three different irrigation method, and their discrepancy.
And when you know there is only flood irrigation, you can use OPT_IRRM=3 for flood irrigation only.