(RESOLVED) geogrid (NetCDF HDF error)

[lslrsgis]

Dear WRF community,

I have met a NetCDF: HDF error. After successfully run geogrid.exe, I am trying to read geo_em.d01.nc through ncview. There is an error as follows:

lsl@lsl-Vostro-3668:~/Downloads/geogrid_original$ ncview geo_em.d01.nc
Ncview 2.1.8 David W. Pierce 8 March 2017
http://meteora.ucsd.edu:80/~pierce/ncview_home_page.html
Copyright (C) 1993 through 2015, David W. Pierce
Ncview comes with ABSOLUTELY NO WARRANTY; for details type `ncview -w'.
This is free software licensed under the Gnu General Public License version 3; type `ncview -c' for redistribution details.

netcdf_fi_get_data: error on nc_get_vara_float call
cdfid=65536 variable=LU_INDEX
start, count:
[0]: 0 1
[1]: 0 62
[2]: 0 91
NetCDF: HDF error

And, when I am trying to use nco command to get the difference of default run and modified run. There is error as follows:

lsl@lsl-Vostro-3668:~/Downloads$ ncdiff ./geogrid_modified_largearea/geo_em.d01.nc ./geogrid_original/geo_em.d01.nc geo_em.d01.diff.nc

ERROR: nco_get_vara() failed to nc_get_vara() variable "ALBEDO12M"

nco_err_exit(): ERROR Short NCO-generated message (usually name of function that triggered error): nco_get_vara()

nco_err_exit(): ERROR Error code is -101. Translation into English with nc_strerror(-101) is "NetCDF: HDF error"

nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)

These files can be read correctly by Panoply and NCL. I am wondering if there is something relative to my NetCDF libraries (HDF support)?

Any indications would be appreciated.

 

[Ming Chen]

I can use ncview to look at your data. Below is the information shown on screen:
ncview geo_em.d01.nc
Ncview 2.1.7 David W. Pierce 29 March 2016
http://meteora.ucsd.edu:80/~pierce/ncview_home_page.html
Copyright (C) 1993 through 2015, David W. Pierce
Ncview comes with ABSOLUTELY NO WARRANTY; for details type `ncview -w'.
This is free software licensed under the Gnu General Public License version 3; type `ncview -c' for redistribution details.

Note: no Ncview app-defaults file found, using internal defaults

ncdiff also works fine.

Please reinstall the software package (e.g., ncview, nco) and try again.