
I have a similar problem than others have reported in the past.
I have a WRF domain configuration with 15 nests. The outer domain is quite large, and within this grid, there are 7 nests (each with a nest).
When I run real.exe with all 15 domains, I get the infamous
-------------- FATAL CALLED ---------------
FATAL CALLED FROM FILE: <stdin> LINE: 5622
invalid parent id for domain 2
-------------------------------------------
The problems seem to originate with d12... That is when I sequentially remove domains and keep D1-D3, D1-D5,...etc. All these complete without problems, when I add D12 and D13 the error occurs. A run with D1 and only what corresponds to D12/D13 is OK.
The inner grids don't appear to be close to the outer domain boundaries. The small domains are 121 x 121 grid points.
Any help will be appreciated. There is probably a simple solution, but after 2 days I cannot see it.
I attached the domain plot and the namelists. All runs were done with WPS4.2 and WRF V4.2.1. and with MAX_DOMAINS = 21.