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(RESOLVED) When compiling WPS3.9.1, weird things georigid.exe and ungrib.exe were generated, but one metgrid.exe

This post was from a previous version of the WRF&MPAS-A Support Forum. New replies have been disabled and if you have follow up questions related to this post, then please start a new thread from the forum home page.

J

Jin Yin bao

New member
Dear Professor,

（1）I installed it according to the teaching of this website.

http://www2.mmm.ucar.edu/wrf/OnLineTutorial/compilation_tutorial.php#STEP1

（2）I have the following error when compiling WPS3.9.1.
[ybjin@inode1 WPS]$ ./compile > log.compile
read_geogrid.c:23:0: warning: "BIG_ENDIAN" redefined [enabled by default]
#define BIG_ENDIAN 0
^
In file included from /usr/include/bits/waitstatus.h:64:0,
from /usr/include/stdlib.h:42,
from read_geogrid.c:12:
/usr/include/endian.h:46:0: note: this is the location of the previous definition
# define BIG_ENDIAN __BIG_ENDIAN
^
read_geogrid.c:24:0: warning: "LITTLE_ENDIAN" redefined [enabled by default]
#define LITTLE_ENDIAN 1
^
In file included from /usr/include/bits/waitstatus.h:64:0,
from /usr/include/stdlib.h:42,
from read_geogrid.c:12:
/usr/include/endian.h:45:0: note: this is the location of the previous definition
# define LITTLE_ENDIAN __LITTLE_ENDIAN
^
read_geogrid.c: In function ‘read_geogrid_’:
read_geogrid.c:124:13: warning: left shift count >= width of type [enabled by default]
if ((*isigned) && (ival > (1 << 31))) ival -= (1 << 32);
^
Makefile:44: warning: overriding recipe for target `.f.o'
/media/small/ybjin/WRFV3.9.1.1/Build_WRF/WPS/configure.wps:100: warning: ignoring old recipe for target `.f.o'
Makefile:48: warning: overriding recipe for target `.c.o'
/media/small/ybjin/WRFV3.9.1.1/Build_WRF/WPS/configure.wps:96: warning: ignoring old recipe for target `.c.o'
ar: creating libw3.a
Makefile:67: warning: overriding recipe for target `.F.o'
/media/small/ybjin/WRFV3.9.1.1/Build_WRF/WPS/configure.wps:104: warning: ignoring old recipe for target `.F.o'
Makefile:72: warning: overriding recipe for target `.f.o'
/media/small/ybjin/WRFV3.9.1.1/Build_WRF/WPS/configure.wps:100: warning: ignoring old recipe for target `.f.o'
Makefile:75: warning: overriding recipe for target `.c.o'
/media/small/ybjin/WRFV3.9.1.1/Build_WRF/WPS/configure.wps:96: warning: ignoring old recipe for target `.c.o'
ar: creating libg2_4.a
Makefile:90: warning: overriding recipe for target `.F.o'
../../configure.wps:104: warning: ignoring old recipe for target `.F.o'
Makefile:95: warning: overriding recipe for target `.c.o'
../../configure.wps:96: warning: ignoring old recipe for target `.c.o'
ar: creating libpgu.a
/data/ybjin/WRFV3.9.1.1/Build_WRF/LIBRARIES/grib2/lib/libjasper.a(jas_stream.o): In function `jas_stream_tmpfile':
/data/ybjin/WRFV3.9.1.1/Build_WRF/LIBRARIES/jasper-1.900.1/src/libjasper/base/jas_stream.c:368: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
scan_input.f90:14.8:

use netcdf
1
Fatal Error: Can't open module file 'netcdf.mod' for reading at (1): No such file or directory
make[1]: [scan_input.o] Error 1 (ignored)
mpas_mesh.f90:14.8:

use scan_input
1
Fatal Error: Can't open module file 'scan_input.mod' for reading at (1): No such file or directory
make[1]: [mpas_mesh.o] Error 1 (ignored)
remapper.f90:14.8:

use mpas_mesh
1
Fatal Error: Can't open module file 'mpas_mesh.mod' for reading at (1): No such file or directory
make[1]: [remapper.o] Error 1 (ignored)
process_domain_module.f90:14.7:

use mpas_mesh
1
Fatal Error: Can't open module file 'mpas_mesh.mod' for reading at (1): No such file or directory
make[1]: [process_domain_module.o] Error 1 (ignored)
metgrid.f90:23.7:

use process_domain_module
1
Fatal Error: Can't open module file 'process_domain_module.mod' for reading at (1): No such file or directory
make[1]: [metgrid.o] Error 1 (ignored)
gfortran: error: metgrid.o: No such file or directory
gfortran: error: process_domain_module.o: No such file or directory
gfortran: error: scan_input.o: No such file or directory
gfortran: error: mpas_mesh.o: No such file or directory
gfortran: error: remapper.o: No such file or directory
make[1]: [metgrid.exe] Error 1 (ignored)
Makefile:90: warning: overriding recipe for target `.F.o'
../../configure.wps:104: warning: ignoring old recipe for target `.F.o'
Makefile:95: warning: overriding recipe for target `.c.o'
../../configure.wps:96: warning: ignoring old recipe for target `.c.o'
g1print.f90:661.71:

'VSTR','M FLX','LMH','LMV','SGLYR','NLAT','ELON','UMAS','VMAS','XPRATE',&
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:600.64:

'GWREC','QREC ','SNOWT','VBDSF','VDDSF','NBDSF','NDDSF','SNFALB',&
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:601.58:

'RLYRS','M FLX',' ',' ',' ','NLAT','ELON','FLDCAP','ACOND','SNOA
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:602.66:

'CCOND','LAI','SFCRH','SALBD',' ',' ','NDVI','DRIP','VBSALB','VWSA
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:602.75:

'CCOND','LAI','SFCRH','SALBD',' ',' ','NDVI','DRIP','VBSALB','VWSA
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:603.8:

'NBSALB','NWSALB','FRZR','FROZR','TSNOW','MTERH',' ','SBSNO','EVBS','E
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:603.17:

'NBSALB','NWSALB','FRZR','FROZR','TSNOW','MTERH',' ','SBSNO','EVBS','E
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:604.16:

'VTCIN','VTCAPE','RSMIN','DSWRF','DLWRF',' ','MSTAV','SFEXC',' ','
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:608.31:

'SNOWC','SNOT','POROS','SBT112','SBT113','SBT114','SBT115',' ','RCS'
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:608.40:

'SNOWC','SNOT','POROS','SBT112','SBT113','SBT114','SBT115',' ','RCS'
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:608.49:

'SNOWC','SNOT','POROS','SBT112','SBT113','SBT114','SBT115',' ','RCS'
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:608.58:

'SNOWC','SNOT','POROS','SBT112','SBT113','SBT114','SBT115',' ','RCS'
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.23:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.32:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.41:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.50:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:576.60:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.69:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','M
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:576.78:

'ETSRG','RHPW','OZMAX1','OZMAX8','PDMAX1','PDMAX24','MAXREF','MXUPHL','MAXU
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:577.8:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:577.17:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
g1print.f90:577.42:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:577.52:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:577.62:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:577.72:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:577.82:

'MAXDVV','MAXVIG','RETOP','VRATE','TCSRG20','TCSRG30','TCSRG40','TCSRG50','TCSR
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:578.8:

'TCSRG70','TCSRG80','TCSRG90','HINDX','DIFTEN','PSPCP','MAXUW','MAXVW','
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:578.18:

'TCSRG70','TCSRG80','TCSRG90','HINDX','DIFTEN','PSPCP','MAXUW','MAXVW','
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:578.28:

'TCSRG70','TCSRG80','TCSRG90','HINDX','DIFTEN','PSPCP','MAXUW','MAXVW','
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/7)
g1print.f90:578.46:

'TCSRG70','TCSRG80','TCSRG90','HINDX','DIFTEN','PSPCP','MAXUW','MAXVW','
1
Warning: Initialization string starting at (1) was truncated to fit the variable (5/6)
Makefile:90: warning: overriding recipe for target `.F.o'
../../configure.wps:104: warning: ignoring old recipe for target `.F.o'
Makefile:95: warning: overriding recipe for target `.c.o'
../../configure.wps:96: warning: ignoring old recipe for target `.c.o'
/data/ybjin/WRFV3.9.1.1/Build_WRF/LIBRARIES/grib2/lib/libjasper.a(jas_stream.o): In function `jas_stream_tmpfile':
/data/ybjin/WRFV3.9.1.1/Build_WRF/LIBRARIES/jasper-1.900.1/src/libjasper/base/jas_stream.c:368: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

（3）After that, I checked a lot of related content on the official forum, but most of them were not related to my question. Later I found a first pass, but I didn't understand it （http://www.starnix.ir/questions/مشکل-در-کامپایل-نمودن-wps）

（4）please give me help , thank you very much .

（5）View attachment wrflog.compileView attachment configure.wrfView attachment wpslog.compileView attachment configure.wps


Yinbao Jin
 
Hi,

Can you try to just attach your WPS compile log and your configure.wps file, instead of pasting them? It makes it easier for us to look through if we have the file. While you're at it, can you also attach your WRF compile log and configure.wrf file too? If the forum will not allow you to attach a particular file extension name, add the extension .txt and you should be able to attach it (also let me know the type you weren't able to attach and I'll add it to the allowed list). Thanks!
 
Thanks for attaching those. So to verify, ungrib and geogrid compiled correctly, but not metgrid.exe. Is that correct?

If so, this is likely a problem that has to do with the added capability to use MPAS output files as input to WPS. Errors in metgrid are all related to the netCDF library, and in metgrid we make direct calls to the netCDF Fortran 90 interface (specifically in the modification for MPAS input), while we think the WRF netCDF I/O API only uses the netCDF Fortran 77 interface. The solution is to replace your WPS/metgrid/src/scan_input.F file with this modified file: View attachment scan_input.F. Unfortunately this will remove the ability to initialize WRF simulations with MPAS output, but as long as you don't need that capability, it should be fine. You'll then need to go back to WPS/ and recompile.

Let me know if that fixes the problem.
 
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