WRF compile ERROR
- Thread starter vrojas
- Start date
D
Deleted member 3607
Guest
can you type this command from the terminal you are trying to compile WRF with?
env | sort
and then put the output into a text file
env | sort
and then put the output into a text file
D
Deleted member 3607
Guest
Are you trying to install WRF with the conda package activated? Does it show something in the terminal like (base)
D
Deleted member 3607
Guest
So what is happening is because Anaconda is a mini environment on the desktop it has library files that are the same name as the ones you installed for WRF.
So you can do two things.
1. Uninstall Anaconda but then if you are using anaconda for any of your software it won't work.
2. Enter these commands to make anaconda not start up automatically.
conda activate base
conda config --set auto_activate_base false
conda deactivate
then restart the terminal and conda should not come on automatically and WRF should install properly,
D
Deleted member 3607
Guest
Good afternoon,
Can you please attach config.log from the WRF folder. I want to make sure everything is correct
@vrojas
To be certain, did you go through the system environment tests listed in the compile tutorial, and did you pass them all?
The error message showing is:
This happens right at the beginning of the compile. Can you try commands at the top of the compile by issuing the following commands:
From the top-level WRF directory, issue a "clean -a" to clean the code, then reconfigure. After that, enter these one at a time. As you go, check for the new files I've indicated, and if, at any point, you don't have one, stop and let me know what that file is.
Then issue an "ls" to check that you now have a file called "ESMF_Base.b"
Then issue an "ls" to check that you now have a file called "ESMF_Fraction.b"
Then issue an "ls" to check that you now have a file called "ESMF_Fraction.f"
Then issue an "ls" to check that you now have a file called "ESMF_Base.f"
That last line seems to be the one the compile is tripping up on. It's claiming you don't have the file "ESMF_Fraction.b," but if you had it in the steps above, you should have it now.
Let me know how this goes.
To be certain, did you go through the system environment tests listed in the compile tutorial, and did you pass them all?
The error message showing is:
Code:
/lib/cpp -P -nostdinc -I/home/wrf/wrf_build/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DLANDREAD_STUB=1 -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=0 -DBUILD_RRTMK=0 -DBUILD_SBM_FAST=1 -DSHOW_ALL_VARS_USED=0 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -I. ESMF_Base.b > ESMF_Base.f
/bin/sh: line 1: /lib/cpp: No such file or directory
/bin/sh: line 1: /lib/cpp: No such file or directory
make[3]: [Makefile:58: ESMF_Fraction.o] Error 127 (ignored)This happens right at the beginning of the compile. Can you try commands at the top of the compile by issuing the following commands:
From the top-level WRF directory, issue a "clean -a" to clean the code, then reconfigure. After that, enter these one at a time. As you go, check for the new files I've indicated, and if, at any point, you don't have one, stop and let me know what that file is.
Code:
cd external/esmf_time_f90
Code:
/bin/rm -f ESMF_Base.o
Code:
/bin/rm -f ESMF_Fraction.o
Code:
sed -e "/\!.*'/s/'//g" ESMF_Base.F90 > ESMF_Base.bThen issue an "ls" to check that you now have a file called "ESMF_Base.b"
Code:
sed -e "/\!.*'/s/'//g" ESMF_Fraction.F90 > ESMF_Fraction.bThen issue an "ls" to check that you now have a file called "ESMF_Fraction.b"
Code:
/lib/cpp -P -nostdinc -I/home/wrf/wrf_build/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DLANDREAD_STUB=1 -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=0 -DBUILD_RRTMK=0 -DBUILD_SBM_FAST=1 -DSHOW_ALL_VARS_USED=0 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -I. ESMF_Fraction.b > ESMF_Fraction.fThen issue an "ls" to check that you now have a file called "ESMF_Fraction.f"
Code:
/lib/cpp -P -nostdinc -I/home/wrf/wrf_build/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DDA_CORE=0 -DWRFPLUS=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -DDM_PARALLEL -DNETCDF -DLANDREAD_STUB=1 -DUSE_ALLOCATABLES -Dwrfmodel -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DBUILD_RRTMG_FAST=0 -DBUILD_RRTMK=0 -DBUILD_SBM_FAST=1 -DSHOW_ALL_VARS_USED=0 -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional-cpp -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT -I. ESMF_Base.b > ESMF_Base.fThen issue an "ls" to check that you now have a file called "ESMF_Base.f"
Code:
/bin/rm -f ESMF_Fraction.bThat last line seems to be the one the compile is tripping up on. It's claiming you don't have the file "ESMF_Fraction.b," but if you had it in the steps above, you should have it now.
Let me know how this goes.
D
Deleted member 3607
Guest
Thanks @kwerner I was about to get to that bit too. I saw the cpp issue as well
Hi K and Will,
The bug associated with /lib/cpp has been fixed. In Arch linux the executable /lib/cpp did not exist, so I linked it from /usr/bin with the following command: ln -s /usr/bin/cpp /lib. Then, start over by running the following commands: ./clean -a; ./configure; ./compile em_real >& log_compile_04.txt & tail -f log_compile_04.txt. Now the error is associated with make[3]: time: No such file or directory, as shown in the attached log file (log_compile_04.txt). I will be attentive again to your recommendations and suggestions to solve this new error.
Thank you very much K and Will, for your valuable help.
PS: When doing both tests (gcc compiler and netcdf-mpi), both passed successfully.
best wishes