Here is my namelist.input file:
&time_control
start_year = 2023, 2023, 2023,
start_month = 02, 02, 02,
start_day = 10, 10, 10,
start_hour = 00, 00, 00,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2023, 2023, 2023,
end_month = 02, 02, 02,
end_day = 28, 28, 28,
end_hour = 12, 12, 12,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
interval_seconds = 21600
input_from_file = .true.,.true.,.true.,
history_interval = 60, 60, 60,
frames_per_outfile = 1, 1, 1,
restart = .false.,
restart_interval = 11520
write_hist_at_0h_rst = .true.,
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
bdy_inname = "wrfbdy_d<domain>_<date>",
iofields_filename = "myoutfields.txt","myoutfields.txt","myoutfields.txt",
auxinput1_inname = 'met_em.d<domain>.<date>'
auxinput4_inname = 'wrflowinp_d<domain>',
!auxinput5_inname = 'wrfchemi_<hr>z_d<domain>',
!auxinput6_inname = 'wrfbiochemi_d01',
!auxinput7_inname = 'wrffirechemi_d<domain>',
!auxinput8_inname = 'wrfchemi_gocart_bg_d<domain>',
!auxinput12_inname = 'wrf_chem_input',
!auxinput13_inname = 'wrfchemv_d<domain>'
!history_outname = '/project/k1090/sagar/WRF_edit_fractions_nest_ssm_jja/wrfchem-3.8.1/test/em_real/large_files/wrfout_d<domain>_<date>',
auxinput4_interval = 360, 360, 360,
!auxinput5_interval_m = 60480, 60480, 60480,
!auxinput7_interval_m = 1440, 1440, 1440,
!auxinput8_interval_m = 1440, 1440, 1440,
io_form_auxinput2 = 2,
io_form_auxinput4 = 2, !sst data input
!io_form_auxinput5 = 2, !anthropogenic-emission input netcdf
!io_form_auxinput6 = 0, !biogenic emissions input netcdf
!io_form_auxinput7 = 0, !biomass burning input netcdf
!io_form_auxinput8 = 0, !gocart background emissions input netcdf
!io_form_auxinput12 = 0, !set to use previous simulation data to initilize chemistry
!io_form_auxinput13 = 0, !volcanic emissions input netcdf
!io_form_auxinput14 = 0, !aircraft emissions input netcdf
!io_form_auxinput15 = 0, !co2 or ghg gases emissions input netcdf only for chem_opt = 16 or 17
!io_form_auxinput = 0,
debug_level = 0,
/
&domains
time_step = 24,
time_step_fract_num = 0,
time_step_fract_den = 1,
!use_adaptive_time_step = .false.,
step_to_output_time = .true.,
target_cfl = 1.28, 1.28, 1.28,
!target_hcfl = 0.9, 0.9, 0.9,
!max_step_increase_pct = 5, 5, 5,
!starting_time_step = 36, 12, 4,
!max_time_step = 54, 18, 6,
!min_time_step = 9, 3, 1,
adaptation_domain = 1,
time_step_fract_num = 0,
time_step_fract_den = 1,
reasonable_time_step_ratio = 20,
max_dom = 3,
e_we = 828, 718, 508,
e_sn = 570, 754, 502,
e_vert = 60, 60, 60,
auto_levels_opt = 2,
dzbot = 40.,
dzstretch_s = 1.3,
dzstretch_u = 1.1,
p_top_requested = 10000,
num_metgrid_levels = 138,
num_metgrid_soil_levels = 4,
dx = 8894.198, 2964.733, 988.2442,
dy = 8894.198, 2964.733, 988.2442,
num_metgrid_soil_levels = 4,
grid_id = 1, 2, 3,
parent_id = 0, 1, 2,
i_parent_start = 1, 504, 272,
j_parent_start = 1, 163, 194,
parent_grid_ratio = 1, 3, 3,
parent_time_step_ratio = 1, 3, 3,
feedback = 0,
smooth_option = 1
zap_close_levels = 50
interp_type = 1
t_extrap_type = 2
force_sfc_in_vinterp = 0
use_levels_below_ground = .true.
use_surface = .true.
lagrange_order = 1
sfcp_to_sfcp = .true.,
/
&physics
mp_physics = 40, 40, 40,
!progn = 1, 1, 1,
ra_lw_physics = 4, 4, 4,
ra_sw_physics = 4, 4, 4,
radt = 9, 3, 1,
sf_sfclay_physics = 2, 2, 2,
sf_surface_physics = 2, 2, 2,
bl_pbl_physics = 2, 2, 2,
bldt = 9, 3, 1,
cu_physics = 11, 11, 11,
cugd_avedx = 1,
cu_diag = 0, 0, 0,
cudt = 0, 0, 0,
ishallow = 1,
isfflx = 1,
ifsnow = 1,
icloud = 1,
surface_input_source = 1,
num_soil_layers = 4,
sf_urban_physics = 0, 0, 0,
mp_zero_out = 2,
mp_zero_out_thresh = 1.e-12,
maxiens = 1,
maxens = 3,
maxens2 = 3,
maxens3 = 16,
ensdim = 144,
cu_rad_feedback = .true.,
sst_update = 1
aercu_opt = 2,
aercu_fct = 1,
no_src_types_cu = 10,
alevsiz_cu = 30,
!aer_opt = 3,
/
&fdda
/
&dynamics
rk_ord = 3,
w_damping = 1,
diff_opt = 1,
km_opt = 4,
base_temp = 290.
damp_opt = 0,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.01, 0.01, 0.01,
diff_6th_opt = 0,
diff_6th_factor = 0.12, 0.12, 0.12,
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 2, 2, 1,
scalar_adv_opt = 2, 2, 1,
chem_adv_opt = 2, 2, 1,
tke_adv_opt = 2, 2, 1,
time_step_sound = 4, 4, 4,
h_mom_adv_order = 5, 5, 5,
v_mom_adv_order = 3, 3, 3,
h_sca_adv_order = 5, 5, 5,
v_sca_adv_order = 3, 3, 3,
/
&bdy_control
multi_bdy_files = .true.,
spec_bdy_width = 5,
spec_zone = 1,
relax_zone = 4,
specified = .true., .false., .false.,
nested = .false., .true., .true.,
polar = .false., .false., .false.
/
&grib2
/
&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/