Thanks so much for the response, and I totally understand the delay. Actually, the override is already set. See the namelist below ( could set it to false and see what happens?):
!!!!!For the 25-km experiments' wrf.exe execution
!run_days controls the integration time
!run_days should always be 180 or less
&time_control
run_days = 90,
run_hours = 0,
run_minutes = 0,
run_seconds = 0,
start_year = 2016,
start_month = 03,
start_day = 28,
start_hour = 00,
end_year = 2016,
end_month = 08,
end_day = 01,
end_hour = 00,
interval_seconds = 21600
input_from_file = .true.,
history_interval = 360,
frames_per_outfile = 1,
restart = .true.,
restart_interval = 14400,
write_hist_at_0h_rst = .false.
adjust_output_times = .true.,
override_restart_timers = .true.
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
io_form_auxinput2 = 2
io_form_auxinput4 = 2
auxinput4_inname = "wrflowinp_d<domain>",
auxinput4_interval_m = 360,
!3-hourly files
auxhist7_outname = "hour3_d<domain>_<date>",
auxhist7_interval = 180,
frames_per_auxhist7 = 1,
io_form_auxhist7 = 2
!hourly files
auxhist8_outname = "hour1_d<domain>_<date>",
auxhist8_interval = 60,
frames_per_auxhist8 = 1,
io_form_auxhist8 = 2
debug_level = 0,
/
&domains
time_step = 120,
use_adaptive_time_step = .true.,
step_to_output_time = .true.
target_cfl = 1.2, 1.2
max_step_increase_pct = 5, 51
adaptation_domain = 1
starting_time_step = -1, -1
max_time_step = -1, -1
min_time_step = 1, 1,
max_dom = 1,
parent_id = 1,
parent_grid_ratio = 1,
i_parent_start = 1,
j_parent_start = 1,
s_we = 1,
s_sn = 1,
e_we = 501,
e_sn = 321,
sfcp_to_sfcp = .true.,
e_vert = 40,
p_top_requested = 5000,
num_metgrid_levels = 38,
num_metgrid_soil_levels = 4,
dx = 25000,
dy = 25000,
grid_id = 1,
parent_time_step_ratio = 1,
feedback = 0,
smooth_option = 0
smooth_cg_topo = .true.,
/
&physics
!New
mp_zero_out = 2,
mp_zero_out_thresh = 1.e-8
slope_rad = 1,
topo_shading = 1,
shadlen = 1,
ysu_topdown_pblmix = 1,
sf_ocean_physics = 0,
isftcflx = 1,
oml_hml0 = 50
oml_gamma = 0.14
mp_physics = 51,
cu_physics = 16,
ra_lw_physics = 4,
ra_sw_physics = 4,
bl_pbl_physics = 1,
sf_sfclay_physics = 1,
sf_surface_physics = 4,
!link appropriate SSP file to CAMtr_volume_mixing_ratio
ghg_input = 1,
radt = 20,
bldt = 0,
cudt = 0,
icloud = 1,
num_land_cat = 21,
sf_urban_physics = 0,
sst_update = 1,
sst_skin = 1,
sf_lake_physics = 1,
use_lakedepth = 1,
/
&noah_mp
opt_run = 5,
opt_sfc = 1,
opt_rsf = 1,
opt_snf = 1,
opt_rad = 1
!irrigation
dveg = 7,
opt_irr = 3,
opt_irrm = 1,
/
&fdda
grid_fdda = 2,
gfdda_inname = "wrffdda_d<domain>"
gfdda_interval_m = 360,
gfdda_end_h = 48000000,
io_form_gfdda = 2
fgdt = 0,
if_no_pbl_nudging_uv = 1,
if_no_pbl_nudging_t = 1,
if_no_pbl_nudging_q = 1,
if_no_pbl_nudging_ph = 1,
if_zfac_uv = 0,
if_zfac_t = 0,
if_zfac_q = 0,
guv = 0.00003,
gt = 0.00003,
gq = 0.,
gph = 0.00003,
xwavenum = 8,
ywavenum = 5,
/
&dynamics
!new
diff_6th_opt = 1,
hybrid_opt = 0,
w_damping = 0,
diff_opt = 2,
km_opt = 4,
diff_6th_factor = 0.12,
base_temp = 290.
damp_opt = 3,
zdamp = 10000.,
dampcoef = 0.2,
khdif = 0,
kvdif = 0,
non_hydrostatic = .true.,
moist_adv_opt = 1,
scalar_adv_opt = 1,
gwd_opt = 0,
/
&bdy_control
spec_bdy_width = 10,
relax_zone = 9,
specified = .true.
/
&grib2
/
&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/