Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D

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I am getting an warning when trying to execute ./wrf.exe. The Input boundary data is d083003

Timing for main (dt= 15.00): time 2019-05-08_23:59:45 on domain 2: 3.34889 elapsed seconds
Timing for main (dt= 15.00): time 2019-05-08_23:59:45 on domain 1: 3.89559 elapsed seconds
Timing for main (dt= 7.50): time 2019-05-08_23:59:52 on domain 3: 1.09502 elapsed seconds
Timing for main (dt= 7.50): time 2019-05-09_00:00:00 on domain 3: 1.09954 elapsed seconds
Timing for main (dt= 15.00): time 2019-05-09_00:00:00 on domain 2: 3.34407 elapsed seconds
Timing for main (dt= 15.00): time 2019-05-09_00:00:00 on domain 1: 3.88976 elapsed seconds
mediation_integrate.G 1242 DATASET=HISTORY
mediation_integrate.G 1243 grid%id 1 grid%oid 6
Timing for Writing wrfout_d01_2019-05-09_00:00:00 for domain 1: 0.70340 elapsed seconds
Timing for Writing auxhist24_d01_2019-05-09_00:00:00 for domain 1: 0.00455 elapsed seconds
d01 2019-05-09_00:00:00 Input data is acceptable to use: wrflowinp_d01
d01 2019-05-09_00:00:00 Input data processed for aux input 4 for domain 1
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
Timing for Writing restart for domain 1: 8.06871 elapsed seconds
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
Timing for Writing restart for domain 2: 16.89898 elapsed seconds
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning VARIABLE NOT FOUND in ext_pnc_put_var_ti.code CHAR, line 88 3000 ISEEDARR_MULT3D
d01 2019-05-09_00:00:00 Warning BAD MEMORY ORDER |ZZ | in wrf_io.F90, line 2358
Timing for Writing restart for domain 3: 19.69744 elapsed seconds
d01 2019-05-09_00:00:00 Input data is acceptable to use: wrfbdy_d01
Timing for processing lateral boundary for domain 1: 0.22115 elapsed seconds
mediation_integrate.G 1242 DATASET=HISTORY
mediation_integrate.G 1243 grid%id 2 grid%oid 6
Timing for Writing wrfout_d02_2019-05-09_00:00:00 for domain 2: 0.76054 elapsed seconds
d02 2019-05-09_00:00:00 Input data is acceptable to use: wrflowinp_d02
d02 2019-05-09_00:00:00 Input data processed for aux input 4 for domain 2
mediation_integrate.G 1242 DATASET=HISTORY
mediation_integrate.G 1243 grid%id 3 grid%oid 6
Timing for Writing wrfout_d03_2019-05-09_00:00:00 for domain 3: 0.87506 elapsed seconds
d03 2019-05-09_00:00:00 Input data is acceptable to use: wrflowinp_d03
d03 2019-05-09_00:00:00 Input data processed for aux input 4 for domain 3
Timing for main (dt= 7.50): time 2019-05-09_00:00:07 on domain 3: 2.61411 elapsed seconds
Timing for main (dt= 7.50): time 2019-05-09_00:00:15 on domain 3: 1.09805 elapsed seconds
Timing for main (dt= 15.00): time 2019-05-09_00:00:15 on domain 2: 6.20609 elapsed seconds
Timing for main (dt= 15.00): time 2019-05-09_00:00:15 on domain 1: 52.64243 elapsed seconds

[WARNING] yaksa: 12 leaked handle pool objects

Please suggest the required corrections to be made.

Thank You for your time.
 

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If the case can run to to end successfully, then you don't need to worry for the warning message.

However, looking at your namelist.input, I have a major concern about your time_step. For the gridinteral of 27km, I would suggest that you set time_step = 150 (the maximum time step is 6 x DX). The current setting of time-step = 5 is too small.
 
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